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SMS: Smart Model Selection in PhyML.
Lefort V, Longueville JE, Gascuel O. Lefort V, et al. Mol Biol Evol. 2017 Sep 1;34(9):2422-2424. doi: 10.1093/molbev/msx149. Mol Biol Evol. 2017. PMID: 28472384 Free PMC article.
Accounting for ambiguity in ancestral sequence reconstruction.
Oliva A, Pulicani S, Lefort V, Bréhélin L, Gascuel O, Guindon S. Oliva A, et al. Among authors: lefort v. Bioinformatics. 2019 Nov 1;35(21):4290-4297. doi: 10.1093/bioinformatics/btz249. Bioinformatics. 2019. PMID: 30977781
Phylogeny.fr: robust phylogenetic analysis for the non-specialist.
Dereeper A, Guignon V, Blanc G, Audic S, Buffet S, Chevenet F, Dufayard JF, Guindon S, Lefort V, Lescot M, Claverie JM, Gascuel O. Dereeper A, et al. Among authors: lefort v. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W465-9. doi: 10.1093/nar/gkn180. Epub 2008 Apr 19. Nucleic Acids Res. 2008. PMID: 18424797 Free PMC article.
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