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HIV evolutionary dynamics within and among hosts.
Lemey P, Rambaut A, Pybus OG. Lemey P, et al. AIDS Rev. 2006 Jul-Sep;8(3):125-40. AIDS Rev. 2006. PMID: 17078483 Review.
Tracing the origin and history of the HIV-2 epidemic.
Lemey P, Pybus OG, Wang B, Saksena NK, Salemi M, Vandamme AM. Lemey P, et al. Proc Natl Acad Sci U S A. 2003 May 27;100(11):6588-92. doi: 10.1073/pnas.0936469100. Epub 2003 May 12. Proc Natl Acad Sci U S A. 2003. PMID: 12743376 Free PMC article.
Analysis of the evolutionary relationships of HIV-1 and SIVcpz sequences using bayesian inference: implications for the origin of HIV-1.
Paraskevis D, Lemey P, Salemi M, Suchard M, Van De Peer Y, Vandamme AM. Paraskevis D, et al. Mol Biol Evol. 2003 Dec;20(12):1986-96. doi: 10.1093/molbev/msg207. Epub 2003 Aug 29. Mol Biol Evol. 2003. PMID: 12949143
Site stripping based on likelihood ratio reduction is a useful tool to evaluate the impact of non-clock-like behavior on viral phylogenetic reconstructions.
Lemey P, Salemi M, Wang B, Duffy M, Hall WH, Saksena NK, Vandamme AM. Lemey P, et al. FEMS Immunol Med Microbiol. 2003 Nov 28;39(2):125-32. doi: 10.1016/S0928-8244(03)00239-6. FEMS Immunol Med Microbiol. 2003. PMID: 14625095
The molecular population genetics of HIV-1 group O.
Lemey P, Pybus OG, Rambaut A, Drummond AJ, Robertson DL, Roques P, Worobey M, Vandamme AM. Lemey P, et al. Genetics. 2004 Jul;167(3):1059-68. doi: 10.1534/genetics.104.026666. Genetics. 2004. PMID: 15280223 Free PMC article.
Phylogenetic reconstruction of a known HIV-1 CRF04_cpx transmission network using maximum likelihood and Bayesian methods.
Paraskevis D, Magiorkinis E, Magiorkinis G, Kiosses VG, Lemey P, Vandamme AM, Rambaut A, Hatzakis A. Paraskevis D, et al. J Mol Evol. 2004 Nov;59(5):709-17. doi: 10.1007/s00239-004-2651-6. J Mol Evol. 2004. PMID: 15693627
A Bayesian statistical analysis of human T-cell lymphotropic virus evolutionary rates.
Lemey P, Pybus OG, Van Dooren S, Vandamme AM. Lemey P, et al. Infect Genet Evol. 2005 Apr;5(3):291-8. doi: 10.1016/j.meegid.2004.04.005. Epub 2004 Nov 30. Infect Genet Evol. 2005. PMID: 15737921
Role of viral evolutionary rate in HIV-1 disease progression in a linked cohort.
Mikhail M, Wang B, Lemey P, Beckthold B, Vandamme AM, Gill MJ, Saksena NK. Mikhail M, et al. Retrovirology. 2005 Jun 29;2:41. doi: 10.1186/1742-4690-2-41. Retrovirology. 2005. PMID: 15985187 Free PMC article.
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