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Interactive Tree Of Life (iTOL) v4: recent updates and new developments.
Letunic I, Bork P. Letunic I, et al. Nucleic Acids Res. 2019 Jul 2;47(W1):W256-W259. doi: 10.1093/nar/gkz239. Nucleic Acids Res. 2019. PMID: 30931475 Free PMC article.
Recent improvements to the SMART domain-based sequence annotation resource.
Letunic I, Goodstadt L, Dickens NJ, Doerks T, Schultz J, Mott R, Ciccarelli F, Copley RR, Ponting CP, Bork P. Letunic I, et al. Nucleic Acids Res. 2002 Jan 1;30(1):242-4. doi: 10.1093/nar/30.1.242. Nucleic Acids Res. 2002. PMID: 11752305 Free PMC article.
The InterPro Database, 2003 brings increased coverage and new features.
Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Barrell D, Bateman A, Binns D, Biswas M, Bradley P, Bork P, Bucher P, Copley RR, Courcelle E, Das U, Durbin R, Falquet L, Fleischmann W, Griffiths-Jones S, Haft D, Harte N, Hulo N, Kahn D, Kanapin A, Krestyaninova M, Lopez R, Letunic I, Lonsdale D, Silventoinen V, Orchard SE, Pagni M, Peyruc D, Ponting CP, Selengut JD, Servant F, Sigrist CJ, Vaughan R, Zdobnov EM. Mulder NJ, et al. Among authors: letunic i. Nucleic Acids Res. 2003 Jan 1;31(1):315-8. doi: 10.1093/nar/gkg046. Nucleic Acids Res. 2003. PMID: 12520011 Free PMC article.
SMART 4.0: towards genomic data integration.
Letunic I, Copley RR, Schmidt S, Ciccarelli FD, Doerks T, Schultz J, Ponting CP, Bork P. Letunic I, et al. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D142-4. doi: 10.1093/nar/gkh088. Nucleic Acids Res. 2004. PMID: 14681379 Free PMC article.
SMART 5: domains in the context of genomes and networks.
Letunic I, Copley RR, Pils B, Pinkert S, Schultz J, Bork P. Letunic I, et al. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D257-60. doi: 10.1093/nar/gkj079. Nucleic Acids Res. 2006. PMID: 16381859 Free PMC article.
Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation.
Letunic I, Bork P. Letunic I, et al. Bioinformatics. 2007 Jan 1;23(1):127-8. doi: 10.1093/bioinformatics/btl529. Epub 2006 Oct 18. Bioinformatics. 2007. PMID: 17050570
New developments in the InterPro database.
Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bork P, Buillard V, Cerutti L, Copley R, Courcelle E, Das U, Daugherty L, Dibley M, Finn R, Fleischmann W, Gough J, Haft D, Hulo N, Hunter S, Kahn D, Kanapin A, Kejariwal A, Labarga A, Langendijk-Genevaux PS, Lonsdale D, Lopez R, Letunic I, Madera M, Maslen J, McAnulla C, McDowall J, Mistry J, Mitchell A, Nikolskaya AN, Orchard S, Orengo C, Petryszak R, Selengut JD, Sigrist CJ, Thomas PD, Valentin F, Wilson D, Wu CH, Yeats C. Mulder NJ, et al. Among authors: letunic i. Nucleic Acids Res. 2007 Jan;35(Database issue):D224-8. doi: 10.1093/nar/gkl841. Nucleic Acids Res. 2007. PMID: 17202162 Free PMC article.
4DXpress: a database for cross-species expression pattern comparisons.
Haudry Y, Berube H, Letunic I, Weeber PD, Gagneur J, Girardot C, Kapushesky M, Arendt D, Bork P, Brazma A, Furlong EE, Wittbrodt J, Henrich T. Haudry Y, et al. Among authors: letunic i. Nucleic Acids Res. 2008 Jan;36(Database issue):D847-53. doi: 10.1093/nar/gkm797. Epub 2007 Oct 4. Nucleic Acids Res. 2008. PMID: 17916571 Free PMC article.
iPath: interactive exploration of biochemical pathways and networks.
Letunic I, Yamada T, Kanehisa M, Bork P. Letunic I, et al. Trends Biochem Sci. 2008 Mar;33(3):101-3. doi: 10.1016/j.tibs.2008.01.001. Epub 2008 Feb 13. Trends Biochem Sci. 2008. PMID: 18276143
SMART 6: recent updates and new developments.
Letunic I, Doerks T, Bork P. Letunic I, et al. Nucleic Acids Res. 2009 Jan;37(Database issue):D229-32. doi: 10.1093/nar/gkn808. Epub 2008 Oct 31. Nucleic Acids Res. 2009. PMID: 18978020 Free PMC article.
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