Li H - Search Results

1

Improving SNP discovery by base alignment quality.

Li H. Li H. Bioinformatics. 2011 Apr 15;27(8):1157-8. doi: 10.1093/bioinformatics/btr076. Epub 2011 Feb 13. Bioinformatics. 2011. PMID: 21320865 Free PMC article.

2

Fast and accurate short read alignment with Burrows-Wheeler transform.

Li H, Durbin R. Li H, et al. Bioinformatics. 2009 Jul 15;25(14):1754-60. doi: 10.1093/bioinformatics/btp324. Epub 2009 May 18. Bioinformatics. 2009. PMID: 19451168 Free PMC article.

3

Detecting SNPs and estimating allele frequencies in clonal bacterial populations by sequencing pooled DNA.

Holt KE, Teo YY, Li H, Nair S, Dougan G, Wain J, Parkhill J. Holt KE, et al. Among authors: li h. Bioinformatics. 2009 Aug 15;25(16):2074-5. doi: 10.1093/bioinformatics/btp344. Epub 2009 Jun 3. Bioinformatics. 2009. PMID: 19497932 Free PMC article.

4

The Sequence Alignment/Map format and SAMtools.

Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R; 1000 Genome Project Data Processing Subgroup. Li H, et al. Bioinformatics. 2009 Aug 15;25(16):2078-9. doi: 10.1093/bioinformatics/btp352. Epub 2009 Jun 8. Bioinformatics. 2009. PMID: 19505943 Free PMC article.

5

Fast and accurate long-read alignment with Burrows-Wheeler transform.

Li H, Durbin R. Li H, et al. Bioinformatics. 2010 Mar 1;26(5):589-95. doi: 10.1093/bioinformatics/btp698. Epub 2010 Jan 15. Bioinformatics. 2010. PMID: 20080505 Free PMC article.

6

A survey of sequence alignment algorithms for next-generation sequencing.

Li H, Homer N. Li H, et al. Brief Bioinform. 2010 Sep;11(5):473-83. doi: 10.1093/bib/bbq015. Epub 2010 May 11. Brief Bioinform. 2010. PMID: 20460430 Free PMC article. Review.

7

Tabix: fast retrieval of sequence features from generic TAB-delimited files.

Li H. Li H. Bioinformatics. 2011 Mar 1;27(5):718-9. doi: 10.1093/bioinformatics/btq671. Epub 2011 Jan 5. Bioinformatics. 2011. PMID: 21208982 Free PMC article.

8

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data.

Li H. Li H. Bioinformatics. 2011 Nov 1;27(21):2987-93. doi: 10.1093/bioinformatics/btr509. Epub 2011 Sep 8. Bioinformatics. 2011. PMID: 21903627 Free PMC article.

9

pIRS: Profile-based Illumina pair-end reads simulator.

Hu X, Yuan J, Shi Y, Lu J, Liu B, Li Z, Chen Y, Mu D, Zhang H, Li N, Yue Z, Bai F, Li H, Fan W. Hu X, et al. Among authors: li z, li h, li n. Bioinformatics. 2012 Jun 1;28(11):1533-5. doi: 10.1093/bioinformatics/bts187. Epub 2012 Apr 15. Bioinformatics. 2012. PMID: 22508794

10

Exploring single-sample SNP and INDEL calling with whole-genome de novo assembly.

Li H. Li H. Bioinformatics. 2012 Jul 15;28(14):1838-44. doi: 10.1093/bioinformatics/bts280. Epub 2012 May 7. Bioinformatics. 2012. PMID: 22569178 Free PMC article.

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