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Protein subcellular localization prediction for Gram-negative bacteria using amino acid subalphabets and a combination of multiple support vector machines.
Wang J, Sung WK, Krishnan A, Li KB. Wang J, et al. Among authors: li kb. BMC Bioinformatics. 2005 Jul 13;6:174. doi: 10.1186/1471-2105-6-174. BMC Bioinformatics. 2005. PMID: 16011808 Free PMC article.
Incorporating the amino acid properties to predict the significance of missense mutations.
Lee TC, Lee AS, Li KB. Lee TC, et al. Among authors: li kb. Amino Acids. 2008 Oct;35(3):615-26. doi: 10.1007/s00726-008-0087-9. Epub 2008 Apr 16. Amino Acids. 2008. PMID: 18415037
How well do HapMap SNPs capture the untyped SNPs?
Tantoso E, Yang Y, Li KB. Tantoso E, et al. Among authors: li kb. BMC Genomics. 2006 Sep 19;7:238. doi: 10.1186/1471-2164-7-238. BMC Genomics. 2006. PMID: 16982009 Free PMC article.
CMDWave: conserved motifs detection using wavelets.
Riaz T, Li KB, Tang F, Krishnan A. Riaz T, et al. Among authors: li kb. In Silico Biol. 2005;5(4):415-8. In Silico Biol. 2005. PMID: 16268786
MiRTif: a support vector machine-based microRNA target interaction filter.
Yang Y, Wang YP, Li KB. Yang Y, et al. Among authors: li kb. BMC Bioinformatics. 2008 Dec 12;9 Suppl 12(Suppl 12):S4. doi: 10.1186/1471-2105-9-S12-S4. BMC Bioinformatics. 2008. PMID: 19091027 Free PMC article.
Remote protein homology detection using recurrence quantification analysis and amino acid physicochemical properties.
Yang Y, Tantoso E, Li KB. Yang Y, et al. Among authors: li kb. J Theor Biol. 2008 May 7;252(1):145-54. doi: 10.1016/j.jtbi.2008.01.028. Epub 2008 Feb 7. J Theor Biol. 2008. PMID: 18342336
AAIndexLoc: predicting subcellular localization of proteins based on a new representation of sequences using amino acid indices.
Tantoso E, Li KB. Tantoso E, et al. Among authors: li kb. Amino Acids. 2008 Aug;35(2):345-53. doi: 10.1007/s00726-007-0616-y. Epub 2007 Dec 28. Amino Acids. 2008. PMID: 18163182
Multiresolution analysis uncovers hidden conservation of properties in structurally and functionally similar proteins.
Chua GH, Krishnan A, Li KB, Tomita M. Chua GH, et al. Among authors: li kb. J Bioinform Comput Biol. 2006 Dec;4(6):1245-67. doi: 10.1142/s0219720006002442. J Bioinform Comput Biol. 2006. PMID: 17245813
iHAP--integrated haplotype analysis pipeline for characterizing the haplotype structure of genes.
Song CM, Yeo BH, Tantoso E, Yang Y, Lim YP, Li KB, Rajagopal G. Song CM, et al. Among authors: li kb. BMC Bioinformatics. 2006 Dec 1;7:525. doi: 10.1186/1471-2105-7-525. BMC Bioinformatics. 2006. PMID: 17137522 Free PMC article.
pSLIP: SVM based protein subcellular localization prediction using multiple physicochemical properties.
Sarda D, Chua GH, Li KB, Krishnan A. Sarda D, et al. Among authors: li kb. BMC Bioinformatics. 2005 Jun 17;6:152. doi: 10.1186/1471-2105-6-152. BMC Bioinformatics. 2005. PMID: 15963230 Free PMC article.
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