Li S - Search Results

1

Linear-Time Algorithms for RNA Structure Prediction.

Zhang H, Zhang L, Liu K, Li S, Mathews DH, Huang L. Zhang H, et al. Among authors: li s. Methods Mol Biol. 2023;2586:15-34. doi: 10.1007/978-1-0716-2768-6_2. Methods Mol Biol. 2023. PMID: 36705896

2

LazySampling and LinearSampling: Fast Stochastic Sampling of RNA Secondary Structure with Applications to SARS-CoV-2.

Zhang H, Zhang L, Li S, Mathews DH, Huang L. Zhang H, et al. Among authors: li s. bioRxiv [Preprint]. 2021 Nov 24:2020.12.29.424617. doi: 10.1101/2020.12.29.424617. bioRxiv. 2021. PMID: 33398265 Free PMC article. Updated. Preprint.

3

LinearTurboFold: Linear-time global prediction of conserved structures for RNA homologs with applications to SARS-CoV-2.

Li S, Zhang H, Zhang L, Liu K, Liu B, Mathews DH, Huang L. Li S, et al. Proc Natl Acad Sci U S A. 2021 Dec 28;118(52):e2116269118. doi: 10.1073/pnas.2116269118. Proc Natl Acad Sci U S A. 2021. PMID: 34887342 Free PMC article.

4

LazySampling and LinearSampling: fast stochastic sampling of RNA secondary structure with applications to SARS-CoV-2.

Zhang H, Li S, Zhang L, Mathews DH, Huang L. Zhang H, et al. Among authors: li s. Nucleic Acids Res. 2023 Jan 25;51(2):e7. doi: 10.1093/nar/gkac1029. Nucleic Acids Res. 2023. PMID: 36401871 Free PMC article.

5

Generation and Functional Analysis of Defective Viral Genomes during SARS-CoV-2 Infection.

Zhou T, Gilliam NJ, Li S, Spandau S, Osborn RM, Connor S, Anderson CS, Mariani TJ, Thakar J, Dewhurst S, Mathews DH, Huang L, Sun Y. Zhou T, et al. Among authors: li s. mBio. 2023 Jun 27;14(3):e0025023. doi: 10.1128/mbio.00250-23. Epub 2023 Apr 19. mBio. 2023. PMID: 37074178 Free PMC article.

6

A CRISPR-Cas9 mutation in sox9b long intergenic noncoding RNA (slincR) affects zebrafish development, behavior, and regeneration.

Dasgupta S, LaDu JK, Garcia GR, Li S, Tomono-Duval K, Rericha Y, Huang L, Tanguay RL. Dasgupta S, et al. Among authors: li s. Toxicol Sci. 2023 Jul 28;194(2):153-166. doi: 10.1093/toxsci/kfad050. Toxicol Sci. 2023. PMID: 37220911

7

RNA design via structure-aware multifrontier ensemble optimization.

Zhou T, Dai N, Li S, Ward M, Mathews DH, Huang L. Zhou T, et al. Among authors: li s. Bioinformatics. 2023 Jun 30;39(39 Suppl 1):i563-i571. doi: 10.1093/bioinformatics/btad252. Bioinformatics. 2023. PMID: 37387188 Free PMC article.

8

LinearCoFold and LinearCoPartition: linear-time algorithms for secondary structure prediction of interacting RNA molecules.

Zhang H, Li S, Dai N, Zhang L, Mathews DH, Huang L. Zhang H, et al. Among authors: li s. Nucleic Acids Res. 2023 Oct 13;51(18):e94. doi: 10.1093/nar/gkad664. Nucleic Acids Res. 2023. PMID: 37650626 Free PMC article.

9

Biomechanics-mediated endocytosis in atherosclerosis.

Wang J, Xu J, Liu T, Yu C, Xu F, Wang G, Li S, Dai X. Wang J, et al. Among authors: li s. Front Cardiovasc Med. 2024 Apr 4;11:1337679. doi: 10.3389/fcvm.2024.1337679. eCollection 2024. Front Cardiovasc Med. 2024. PMID: 38638885 Free PMC article. Review.

10

Frequent loss of FAM126A expression in colorectal cancer results in selective FAM126B dependency.

Li S, Han T. Li S, et al. iScience. 2024 Mar 29;27(5):109646. doi: 10.1016/j.isci.2024.109646. eCollection 2024 May 17. iScience. 2024. PMID: 38638566 Free PMC article.

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