Li Y - Search Results

1

Flexible Binding of m⁶A Reader Protein YTHDC1 to Its Preferred RNA Motif.

Li Y, Bedi RK, Wiedmer L, Huang D, Śledź P, Caflisch A. Li Y, et al. J Chem Theory Comput. 2019 Dec 10;15(12):7004-7014. doi: 10.1021/acs.jctc.9b00987. Epub 2019 Nov 14. J Chem Theory Comput. 2019. PMID: 31670957

2

Selectively Disrupting m⁶A-Dependent Protein-RNA Interactions with Fragments.

Bedi RK, Huang D, Wiedmer L, Li Y, Dolbois A, Wojdyla JA, Sharpe ME, Caflisch A, Sledz P. Bedi RK, et al. Among authors: li y. ACS Chem Biol. 2020 Mar 20;15(3):618-625. doi: 10.1021/acschembio.9b00894. Epub 2020 Mar 2. ACS Chem Biol. 2020. PMID: 32101404

3

Repulsive Soft-Core Potentials for Efficient Alchemical Free Energy Calculations.

Li Y, Nam K. Li Y, et al. J Chem Theory Comput. 2020 Aug 11;16(8):4776-4789. doi: 10.1021/acs.jctc.0c00163. Epub 2020 Jul 6. J Chem Theory Comput. 2020. PMID: 32559374 Free PMC article.

4

Structural and Dynamic Insights into Redundant Function of YTHDF Proteins.

Li Y, Bedi RK, Moroz-Omori EV, Caflisch A. Li Y, et al. J Chem Inf Model. 2020 Dec 28;60(12):5932-5935. doi: 10.1021/acs.jcim.0c01029. Epub 2020 Oct 19. J Chem Inf Model. 2020. PMID: 33073985

5

Dynamic 3D proteomes reveal protein functional alterations at high resolution in situ.

Cappelletti V, Hauser T, Piazza I, Pepelnjak M, Malinovska L, Fuhrer T, Li Y, Dörig C, Boersema P, Gillet L, Grossbach J, Dugourd A, Saez-Rodriguez J, Beyer A, Zamboni N, Caflisch A, de Souza N, Picotti P. Cappelletti V, et al. Among authors: li y. Cell. 2021 Jan 21;184(2):545-559.e22. doi: 10.1016/j.cell.2020.12.021. Epub 2020 Dec 23. Cell. 2021. PMID: 33357446 Free PMC article.

6

Atomistic and Thermodynamic Analysis of N6-Methyladenosine (m⁶A) Recognition by the Reader Domain of YTHDC1.

Li Y, Bedi RK, Wiedmer L, Sun X, Huang D, Caflisch A. Li Y, et al. J Chem Theory Comput. 2021 Feb 9;17(2):1240-1249. doi: 10.1021/acs.jctc.0c01136. Epub 2021 Jan 20. J Chem Theory Comput. 2021. PMID: 33472367 Free article.

7

METTL3 Inhibitors for Epitranscriptomic Modulation of Cellular Processes.

Moroz-Omori EV, Huang D, Kumar Bedi R, Cheriyamkunnel SJ, Bochenkova E, Dolbois A, Rzeczkowski MD, Li Y, Wiedmer L, Caflisch A. Moroz-Omori EV, et al. Among authors: li y. ChemMedChem. 2021 Oct 6;16(19):3035-3043. doi: 10.1002/cmdc.202100291. Epub 2021 Jul 29. ChemMedChem. 2021. PMID: 34237194 Free PMC article.

8

Fragment Ligands of the m⁶A-RNA Reader YTHDF2.

Nai F, Nachawati R, Zálešák F, Wang X, Li Y, Caflisch A. Nai F, et al. Among authors: li y. ACS Med Chem Lett. 2022 Aug 17;13(9):1500-1509. doi: 10.1021/acsmedchemlett.2c00303. eCollection 2022 Sep 8. ACS Med Chem Lett. 2022. PMID: 36110386 Free PMC article.

9

Ginkgolic acids inhibit SARS-CoV-2 and its variants by blocking the spike protein/ACE2 interplay.

Xiang Y, Zhai G, Li Y, Wang M, Chen X, Wang R, Xie H, Zhang W, Ge G, Zhang Q, Xu Y, Caflisch A, Xu J, Chen H, Chen L. Xiang Y, et al. Among authors: li y. Int J Biol Macromol. 2023 Jan 31;226:780-792. doi: 10.1016/j.ijbiomac.2022.12.057. Epub 2022 Dec 12. Int J Biol Macromol. 2023. PMID: 36521705 Free PMC article.

10

Structure-Based Design of Inhibitors of the m⁶A-RNA Writer Enzyme METTL3.

Bedi RK, Huang D, Li Y, Caflisch A. Bedi RK, et al. Among authors: li y. ACS Bio Med Chem Au. 2023 Jun 14;3(4):359-370. doi: 10.1021/acsbiomedchemau.3c00023. eCollection 2023 Aug 16. ACS Bio Med Chem Au. 2023. PMID: 37599794 Free PMC article.

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