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6,288 results
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featureCounts: an efficient general purpose program for assigning sequence reads to genomic features.
Liao Y, Smyth GK, Shi W. Liao Y, et al. Bioinformatics. 2014 Apr 1;30(7):923-30. doi: 10.1093/bioinformatics/btt656. Epub 2013 Nov 13. Bioinformatics. 2014. PMID: 24227677
The Subread aligner: fast, accurate and scalable read mapping by seed-and-vote.
Liao Y, Smyth GK, Shi W. Liao Y, et al. Nucleic Acids Res. 2013 May 1;41(10):e108. doi: 10.1093/nar/gkt214. Epub 2013 Apr 4. Nucleic Acids Res. 2013. PMID: 23558742 Free PMC article.
Blimp-1 controls plasma cell function through the regulation of immunoglobulin secretion and the unfolded protein response.
Tellier J, Shi W, Minnich M, Liao Y, Crawford S, Smyth GK, Kallies A, Busslinger M, Nutt SL. Tellier J, et al. Among authors: liao y. Nat Immunol. 2016 Mar;17(3):323-30. doi: 10.1038/ni.3348. Epub 2016 Jan 18. Nat Immunol. 2016. PMID: 26779600 Free PMC article.
The R package Rsubread is easier, faster, cheaper and better for alignment and quantification of RNA sequencing reads.
Liao Y, Smyth GK, Shi W. Liao Y, et al. Nucleic Acids Res. 2019 May 7;47(8):e47. doi: 10.1093/nar/gkz114. Nucleic Acids Res. 2019. PMID: 30783653 Free PMC article.
Effector Regulatory T Cell Differentiation and Immune Homeostasis Depend on the Transcription Factor Myb.
Dias S, D'Amico A, Cretney E, Liao Y, Tellier J, Bruggeman C, Almeida FF, Leahy J, Belz GT, Smyth GK, Shi W, Nutt SL. Dias S, et al. Among authors: liao y. Immunity. 2017 Jan 17;46(1):78-91. doi: 10.1016/j.immuni.2016.12.017. Immunity. 2017. PMID: 28099866
Transcriptional profiling of mouse B cell terminal differentiation defines a signature for antibody-secreting plasma cells.
Shi W, Liao Y, Willis SN, Taubenheim N, Inouye M, Tarlinton DM, Smyth GK, Hodgkin PD, Nutt SL, Corcoran LM. Shi W, et al. Among authors: liao y. Nat Immunol. 2015 Jun;16(6):663-73. doi: 10.1038/ni.3154. Epub 2015 Apr 20. Nat Immunol. 2015. PMID: 25894659
A molecular threshold for effector CD8(+) T cell differentiation controlled by transcription factors Blimp-1 and T-bet.
Xin A, Masson F, Liao Y, Preston S, Guan T, Gloury R, Olshansky M, Lin JX, Li P, Speed TP, Smyth GK, Ernst M, Leonard WJ, Pellegrini M, Kaech SM, Nutt SL, Shi W, Belz GT, Kallies A. Xin A, et al. Among authors: liao y. Nat Immunol. 2016 Apr;17(4):422-32. doi: 10.1038/ni.3410. Epub 2016 Mar 7. Nat Immunol. 2016. PMID: 26950239 Free PMC article.
An update on using CRISPR/Cas9 in the one-cell stage mouse embryo for generating complex mutant alleles.
Kueh AJ, Pal M, Tai L, Liao Y, Smyth GK, Shi W, Herold MJ. Kueh AJ, et al. Among authors: liao y. Cell Death Differ. 2017 Oct;24(10):1821-1822. doi: 10.1038/cdd.2017.122. Epub 2017 Jul 28. Cell Death Differ. 2017. PMID: 28753205 Free PMC article. No abstract available.
Dynamic changes in Id3 and E-protein activity orchestrate germinal center and plasma cell development.
Gloury R, Zotos D, Zuidscherwoude M, Masson F, Liao Y, Hasbold J, Corcoran LM, Hodgkin PD, Belz GT, Shi W, Nutt SL, Tarlinton DM, Kallies A. Gloury R, et al. Among authors: liao y. J Exp Med. 2016 May 30;213(6):1095-111. doi: 10.1084/jem.20152003. Epub 2016 May 23. J Exp Med. 2016. PMID: 27217539 Free PMC article.
The transcriptional regulators IRF4, BATF and IL-33 orchestrate development and maintenance of adipose tissue-resident regulatory T cells.
Vasanthakumar A, Moro K, Xin A, Liao Y, Gloury R, Kawamoto S, Fagarasan S, Mielke LA, Afshar-Sterle S, Masters SL, Nakae S, Saito H, Wentworth JM, Li P, Liao W, Leonard WJ, Smyth GK, Shi W, Nutt SL, Koyasu S, Kallies A. Vasanthakumar A, et al. Among authors: liao y, liao w. Nat Immunol. 2015 Mar;16(3):276-85. doi: 10.1038/ni.3085. Epub 2015 Jan 19. Nat Immunol. 2015. PMID: 25599561
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