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Bioinformatics models for predicting antigenic variants of influenza A/H3N2 virus.
Liao YC, Lee MS, Ko CY, Hsiung CA. Liao YC, et al. Bioinformatics. 2008 Feb 15;24(4):505-12. doi: 10.1093/bioinformatics/btm638. Epub 2008 Jan 10. Bioinformatics. 2008. PMID: 18187440
ATIVS: analytical tool for influenza virus surveillance.
Liao YC, Ko CY, Tsai MH, Lee MS, Hsiung CA. Liao YC, et al. Nucleic Acids Res. 2009 Jul;37(Web Server issue):W643-6. doi: 10.1093/nar/gkp321. Epub 2009 May 8. Nucleic Acids Res. 2009. PMID: 19429686 Free PMC article.
An experimentally validated genome-scale metabolic reconstruction of Klebsiella pneumoniae MGH 78578, iYL1228.
Liao YC, Huang TW, Chen FC, Charusanti P, Hong JS, Chang HY, Tsai SF, Palsson BO, Hsiung CA. Liao YC, et al. J Bacteriol. 2011 Apr;193(7):1710-7. doi: 10.1128/JB.01218-10. Epub 2011 Feb 4. J Bacteriol. 2011. PMID: 21296962 Free PMC article.
MrBac: a web server for draft metabolic network reconstructions for bacteria.
Liao YC, Chen JC, Tsai MH, Tang YH, Chen FC, Hsiung CA. Liao YC, et al. Bioeng Bugs. 2011 Sep-Oct;2(5):284-7. doi: 10.4161/bbug.2.5.16113. Epub 2011 Sep 1. Bioeng Bugs. 2011. PMID: 22008641
CISA: contig integrator for sequence assembly of bacterial genomes.
Lin SH, Liao YC. Lin SH, et al. PLoS One. 2013;8(3):e60843. doi: 10.1371/journal.pone.0060843. Epub 2013 Mar 28. PLoS One. 2013. PMID: 23556006 Free PMC article.
MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation.
Liao YC, Lin HH, Sabharwal A, Haase EM, Scannapieco FA. Liao YC, et al. J Microbiol Methods. 2015 Jun;113:72-4. doi: 10.1016/j.mimet.2015.04.006. Epub 2015 Apr 21. J Microbiol Methods. 2015. PMID: 25911337 Free PMC article.
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