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Molecular signatures database (MSigDB) 3.0.
Liberzon A, Subramanian A, Pinchback R, Thorvaldsdóttir H, Tamayo P, Mesirov JP. Liberzon A, et al. Bioinformatics. 2011 Jun 15;27(12):1739-40. doi: 10.1093/bioinformatics/btr260. Epub 2011 May 5. Bioinformatics. 2011. PMID: 21546393 Free PMC article.
Using GenePattern for gene expression analysis.
Kuehn H, Liberzon A, Reich M, Mesirov JP. Kuehn H, et al. Among authors: liberzon a. Curr Protoc Bioinformatics. 2008 Jun;Chapter 7:7.12.1-7.12.39. doi: 10.1002/0471250953.bi0712s22. Curr Protoc Bioinformatics. 2008. PMID: 18551415 Free PMC article. Review.
AraPath: a knowledgebase for pathway analysis in Arabidopsis.
Lai L, Liberzon A, Hennessey J, Jiang G, Qi J, Mesirov JP, Ge SX. Lai L, et al. Among authors: liberzon a. Bioinformatics. 2012 Sep 1;28(17):2291-2. doi: 10.1093/bioinformatics/bts421. Epub 2012 Jul 3. Bioinformatics. 2012. PMID: 22760305 Free PMC article.
GeNets: a unified web platform for network-based genomic analyses.
Li T, Kim A, Rosenbluh J, Horn H, Greenfeld L, An D, Zimmer A, Liberzon A, Bistline J, Natoli T, Li Y, Tsherniak A, Narayan R, Subramanian A, Liefeld T, Wong B, Thompson D, Calvo S, Carr S, Boehm J, Jaffe J, Mesirov J, Hacohen N, Regev A, Lage K. Li T, et al. Among authors: liberzon a. Nat Methods. 2018 Jul;15(7):543-546. doi: 10.1038/s41592-018-0039-6. Epub 2018 Jun 18. Nat Methods. 2018. PMID: 29915188 Free PMC article.
Decomposing Oncogenic Transcriptional Signatures to Generate Maps of Divergent Cellular States.
Kim JW, Abudayyeh OO, Yeerna H, Yeang CH, Stewart M, Jenkins RW, Kitajima S, Konieczkowski DJ, Medetgul-Ernar K, Cavazos T, Mah C, Ting S, Van Allen EM, Cohen O, Mcdermott J, Damato E, Aguirre AJ, Liang J, Liberzon A, Alexe G, Doench J, Ghandi M, Vazquez F, Weir BA, Tsherniak A, Subramanian A, Meneses-Cime K, Park J, Clemons P, Garraway LA, Thomas D, Boehm JS, Barbie DA, Hahn WC, Mesirov JP, Tamayo P. Kim JW, et al. Among authors: liberzon a. Cell Syst. 2017 Aug 23;5(2):105-118.e9. doi: 10.1016/j.cels.2017.08.002. Cell Syst. 2017. PMID: 28837809 Free PMC article.
Characterizing genomic alterations in cancer by complementary functional associations.
Kim JW, Botvinnik OB, Abudayyeh O, Birger C, Rosenbluh J, Shrestha Y, Abazeed ME, Hammerman PS, DiCara D, Konieczkowski DJ, Johannessen CM, Liberzon A, Alizad-Rahvar AR, Alexe G, Aguirre A, Ghandi M, Greulich H, Vazquez F, Weir BA, Van Allen EM, Tsherniak A, Shao DD, Zack TI, Noble M, Getz G, Beroukhim R, Garraway LA, Ardakani M, Romualdi C, Sales G, Barbie DA, Boehm JS, Hahn WC, Mesirov JP, Tamayo P. Kim JW, et al. Among authors: liberzon a. Nat Biotechnol. 2016 May;34(5):539-46. doi: 10.1038/nbt.3527. Epub 2016 Apr 18. Nat Biotechnol. 2016. PMID: 27088724 Free PMC article.
57 results