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Exploring rare conformational species and ionic effects in DNA Holliday junctions using single-molecule spectroscopy.
Joo C, McKinney SA, Lilley DM, Ha T. Joo C, et al. Among authors: lilley dm. J Mol Biol. 2004 Aug 13;341(3):739-51. doi: 10.1016/j.jmb.2004.06.024. J Mol Biol. 2004. PMID: 15288783
The Holliday junction is finally seen with crystal clarity.
Lilley DM, Norman DG. Lilley DM, et al. Nat Struct Biol. 1999 Oct;6(10):897-9. doi: 10.1038/13255. Nat Struct Biol. 1999. PMID: 10504716
The resolving enzyme CCE1 of yeast opens the structure of the four-way DNA junction.
White MF, Lilley DM. White MF, et al. Among authors: lilley dm. J Mol Biol. 1997 Feb 14;266(1):122-34. doi: 10.1006/jmbi.1996.0795. J Mol Biol. 1997. PMID: 9054975
Cooperative control of holliday junction resolution and DNA repair by the SLX1 and MUS81-EME1 nucleases.
Castor D, Nair N, Déclais AC, Lachaud C, Toth R, Macartney TJ, Lilley DM, Arthur JS, Rouse J. Castor D, et al. Among authors: lilley dm. Mol Cell. 2013 Oct 24;52(2):221-33. doi: 10.1016/j.molcel.2013.08.036. Epub 2013 Sep 26. Mol Cell. 2013. PMID: 24076219 Free PMC article.
The interaction of four-way DNA junctions with resolving enzymes.
Lilley DM. Lilley DM. Biochem Soc Trans. 2010 Apr;38(2):399-403. doi: 10.1042/BST0380399. Biochem Soc Trans. 2010. PMID: 20298191 Review.
The structural basis of Holliday junction resolution by T7 endonuclease I.
Hadden JM, Déclais AC, Carr SB, Lilley DM, Phillips SE. Hadden JM, et al. Among authors: lilley dm. Nature. 2007 Oct 4;449(7162):621-4. doi: 10.1038/nature06158. Epub 2007 Sep 16. Nature. 2007. PMID: 17873858
The importance of the N-terminus of T7 endonuclease I in the interaction with DNA junctions.
Freeman AD, Déclais AC, Lilley DM. Freeman AD, et al. Among authors: lilley dm. J Mol Biol. 2013 Jan 23;425(2):395-410. doi: 10.1016/j.jmb.2012.11.029. Epub 2012 Dec 1. J Mol Biol. 2013. PMID: 23207296
Fluorescence-force spectroscopy maps two-dimensional reaction landscape of the holliday junction.
Hohng S, Zhou R, Nahas MK, Yu J, Schulten K, Lilley DM, Ha T. Hohng S, et al. Among authors: lilley dm. Science. 2007 Oct 12;318(5848):279-83. doi: 10.1126/science.1146113. Science. 2007. PMID: 17932299 Free PMC article.
Observing spontaneous branch migration of Holliday junctions one step at a time.
McKinney SA, Freeman AD, Lilley DM, Ha T. McKinney SA, et al. Among authors: lilley dm. Proc Natl Acad Sci U S A. 2005 Apr 19;102(16):5715-20. doi: 10.1073/pnas.0409328102. Epub 2005 Apr 11. Proc Natl Acad Sci U S A. 2005. PMID: 15824311 Free PMC article.
Observation of internal cleavage and ligation reactions of a ribozyme.
Nahas MK, Wilson TJ, Hohng S, Jarvie K, Lilley DM, Ha T. Nahas MK, et al. Among authors: lilley dm. Nat Struct Mol Biol. 2004 Nov;11(11):1107-13. doi: 10.1038/nsmb842. Epub 2004 Oct 10. Nat Struct Mol Biol. 2004. PMID: 15475966
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