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A compendium of RNA-binding motifs for decoding gene regulation.
Ray D, Kazan H, Cook KB, Weirauch MT, Najafabadi HS, Li X, Gueroussov S, Albu M, Zheng H, Yang A, Na H, Irimia M, Matzat LH, Dale RK, Smith SA, Yarosh CA, Kelly SM, Nabet B, Mecenas D, Li W, Laishram RS, Qiao M, Lipshitz HD, Piano F, Corbett AH, Carstens RP, Frey BJ, Anderson RA, Lynch KW, Penalva LO, Lei EP, Fraser AG, Blencowe BJ, Morris QD, Hughes TR. Ray D, et al. Nature. 2013 Jul 11;499(7457):172-7. doi: 10.1038/nature12311. Nature. 2013. PMID: 23846655 Free PMC article.
Cutoff Suppresses RNA Polymerase II Termination to Ensure Expression of piRNA Precursors.
Chen YA, Stuwe E, Luo Y, Ninova M, Le Thomas A, Rozhavskaya E, Li S, Vempati S, Laver JD, Patel DJ, Smibert CA, Lipshitz HD, Toth KF, Aravin AA. Chen YA, et al. Among authors: Lipshitz HD. Mol Cell. 2016 Jul 7;63(1):97-109. doi: 10.1016/j.molcel.2016.05.010. Epub 2016 Jun 9. Mol Cell. 2016. PMID: 27292797 Free PMC article.
Staufen2 regulates neuronal target RNAs.
Heraud-Farlow JE, Sharangdhar T, Li X, Pfeifer P, Tauber S, Orozco D, Hörmann A, Thomas S, Bakosova A, Farlow AR, Edbauer D, Lipshitz HD, Morris QD, Bilban M, Doyle M, Kiebler MA. Heraud-Farlow JE, et al. Cell Rep. 2013 Dec 26;5(6):1511-8. doi: 10.1016/j.celrep.2013.11.039. Epub 2013 Dec 19. Cell Rep. 2013. PMID: 24360961
Synthetic antibodies as tools to probe RNA-binding protein function.
Laver JD, Ancevicius K, Sollazzo P, Westwood JT, Sidhu SS, Lipshitz HD, Smibert CA. Laver JD, et al. Mol Biosyst. 2012 Jun;8(6):1650-7. doi: 10.1039/c2mb00007e. Epub 2012 Apr 5. Mol Biosyst. 2012. PMID: 22481296
The influence of microRNAs and poly(A) tail length on endogenous mRNA-protein complexes.
Rissland OS, Subtelny AO, Wang M, Lugowski A, Nicholson B, Laver JD, Sidhu SS, Smibert CA, Lipshitz HD, Bartel DP. Rissland OS, et al. Among authors: Lipshitz HD. Genome Biol. 2017 Oct 31;18(1):211. doi: 10.1186/s13059-017-1330-z. Genome Biol. 2017. PMID: 29089021 Free PMC article.
Measuring mRNA stability during early Drosophila embryogenesis.
Semotok JL, Westwood JT, Goldman AL, Cooperstock RL, Lipshitz HD. Semotok JL, et al. Methods Enzymol. 2008;448:299-334. doi: 10.1016/S0076-6879(08)02616-5. Methods Enzymol. 2008. PMID: 19111183
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