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Epidemiologic data and pathogen genome sequences: a powerful synergy for public health.

Grad YH, Lipsitch M. Grad YH, et al. Among authors: lipsitch m. Genome Biol. 2014 Nov 18;15(11):538. doi: 10.1186/s13059-014-0538-4. Genome Biol. 2014. PMID: 25418119 Free PMC article. Review.

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Within-host whole-genome deep sequencing and diversity analysis of human respiratory syncytial virus infection reveals dynamics of genomic diversity in the absence and presence of immune pressure.

Grad YH, Newman R, Zody M, Yang X, Murphy R, Qu J, Malboeuf CM, Levin JZ, Lipsitch M, DeVincenzo J. Grad YH, et al. Among authors: lipsitch m. J Virol. 2014 Jul;88(13):7286-93. doi: 10.1128/JVI.00038-14. Epub 2014 Apr 16. J Virol. 2014. PMID: 24741088 Free PMC article.

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Shared Genomic Variants: Identification of Transmission Routes Using Pathogen Deep-Sequence Data.

Worby CJ, Lipsitch M, Hanage WP. Worby CJ, et al. Among authors: lipsitch m. Am J Epidemiol. 2017 Nov 15;186(10):1209-1216. doi: 10.1093/aje/kwx182. Am J Epidemiol. 2017. PMID: 29149252 Free PMC article.

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Case-based surveillance of antimicrobial resistance with full susceptibility profiles.

Ryu S, Cowling BJ, Wu P, Olesen S, Fraser C, Sun DS, Lipsitch M, Grad YH. Ryu S, et al. Among authors: lipsitch m. JAC Antimicrob Resist. 2019 Dec;1(3):dlz070. doi: 10.1093/jacamr/dlz070. Epub 2019 Dec 10. JAC Antimicrob Resist. 2019. PMID: 32280945 Free PMC article.

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Projecting the transmission dynamics of SARS-CoV-2 through the postpandemic period.

Kissler SM, Tedijanto C, Goldstein E, Grad YH, Lipsitch M. Kissler SM, et al. Among authors: lipsitch m. Science. 2020 May 22;368(6493):860-868. doi: 10.1126/science.abb5793. Epub 2020 Apr 14. Science. 2020. PMID: 32291278 Free PMC article.

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Targeted surveillance strategies for efficient detection of novel antibiotic resistance variants.

Hicks AL, Kissler SM, Mortimer TD, Ma KC, Taiaroa G, Ashcroft M, Williamson DA, Lipsitch M, Grad YH. Hicks AL, et al. Among authors: lipsitch m. Elife. 2020 Jun 30;9:e56367. doi: 10.7554/eLife.56367. Elife. 2020. PMID: 32602459 Free PMC article.

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Cross-reactive memory T cells and herd immunity to SARS-CoV-2.

Lipsitch M, Grad YH, Sette A, Crotty S. Lipsitch M, et al. Nat Rev Immunol. 2020 Nov;20(11):709-713. doi: 10.1038/s41577-020-00460-4. Epub 2020 Oct 6. Nat Rev Immunol. 2020. PMID: 33024281 Free PMC article. Review.

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Model-informed COVID-19 vaccine prioritization strategies by age and serostatus.

Bubar KM, Reinholt K, Kissler SM, Lipsitch M, Cobey S, Grad YH, Larremore DB. Bubar KM, et al. Among authors: lipsitch m. medRxiv. 2021 Jan 8:2020.09.08.20190629. doi: 10.1101/2020.09.08.20190629. Preprint. medRxiv. 2021. PMID: 33330882 Free PMC article. Updated.

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Model-informed COVID-19 vaccine prioritization strategies by age and serostatus.

Bubar KM, Reinholt K, Kissler SM, Lipsitch M, Cobey S, Grad YH, Larremore DB. Bubar KM, et al. Among authors: lipsitch m. Science. 2021 Feb 26;371(6532):916-921. doi: 10.1126/science.abe6959. Epub 2021 Jan 21. Science. 2021. PMID: 33479118 Free PMC article.

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Concerns about SARS-CoV-2 evolution should not hold back efforts to expand vaccination.

Cobey S, Larremore DB, Grad YH, Lipsitch M. Cobey S, et al. Among authors: lipsitch m. Nat Rev Immunol. 2021 May;21(5):330-335. doi: 10.1038/s41577-021-00544-9. Epub 2021 Apr 1. Nat Rev Immunol. 2021. PMID: 33795856 Free PMC article. Review.

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