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11 results
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Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows.
Excoffier L, Lischer HE. Excoffier L, et al. Among authors: lischer he. Mol Ecol Resour. 2010 May;10(3):564-7. doi: 10.1111/j.1755-0998.2010.02847.x. Epub 2010 Mar 1. Mol Ecol Resour. 2010. PMID: 21565059
PGDSpider: an automated data conversion tool for connecting population genetics and genomics programs.
Lischer HE, Excoffier L. Lischer HE, et al. Bioinformatics. 2012 Jan 15;28(2):298-9. doi: 10.1093/bioinformatics/btr642. Epub 2011 Nov 21. Bioinformatics. 2012. PMID: 22110245
Batch effects in a multiyear sequencing study: False biological trends due to changes in read lengths.
Leigh DM, Lischer HEL, Grossen C, Keller LF. Leigh DM, et al. Among authors: lischer hel. Mol Ecol Resour. 2018 Jul;18(4):778-788. doi: 10.1111/1755-0998.12779. Epub 2018 Apr 16. Mol Ecol Resour. 2018. PMID: 29573184
Avoiding the pitfalls of gene set enrichment analysis with SetRank.
Simillion C, Liechti R, Lischer HE, Ioannidis V, Bruggmann R. Simillion C, et al. Among authors: lischer he. BMC Bioinformatics. 2017 Mar 4;18(1):151. doi: 10.1186/s12859-017-1571-6. BMC Bioinformatics. 2017. PMID: 28259142 Free PMC article.
Reference-guided de novo assembly approach improves genome reconstruction for related species.
Lischer HEL, Shimizu KK. Lischer HEL, et al. BMC Bioinformatics. 2017 Nov 10;18(1):474. doi: 10.1186/s12859-017-1911-6. BMC Bioinformatics. 2017. PMID: 29126390 Free PMC article.
Patterns of polymorphism and selection in the subgenomes of the allopolyploid Arabidopsis kamchatica.
Paape T, Briskine RV, Halstead-Nussloch G, Lischer HEL, Shimizu-Inatsugi R, Hatakeyama M, Tanaka K, Nishiyama T, Sabirov R, Sese J, Shimizu KK. Paape T, et al. Among authors: lischer hel. Nat Commun. 2018 Sep 25;9(1):3909. doi: 10.1038/s41467-018-06108-1. Nat Commun. 2018. PMID: 30254374 Free PMC article.
Ignoring heterozygous sites biases phylogenomic estimates of divergence times: implications for the evolutionary history of microtus voles.
Lischer HE, Excoffier L, Heckel G. Lischer HE, et al. Mol Biol Evol. 2014 Apr;31(4):817-31. doi: 10.1093/molbev/mst271. Epub 2013 Dec 25. Mol Biol Evol. 2014. PMID: 24371090
Assessing Metagenomic Signals Recovered from Lyuba, a 42,000-Year-Old Permafrost-Preserved Woolly Mammoth Calf.
Ferrari G, Lischer HEL, Neukamm J, Rayo E, Borel N, Pospischil A, Rühli F, Bouwman AS, Campana MG. Ferrari G, et al. Among authors: lischer hel. Genes (Basel). 2018 Aug 31;9(9):436. doi: 10.3390/genes9090436. Genes (Basel). 2018. PMID: 30200350 Free PMC article.
New genomic features of the polled intersex syndrome variant in goats unraveled by long-read whole-genome sequencing.
Simon R, Lischer HEL, Pieńkowska-Schelling A, Keller I, Häfliger IM, Letko A, Schelling C, Lühken G, Drögemüller C. Simon R, et al. Among authors: lischer hel. Anim Genet. 2020 Jun;51(3):439-448. doi: 10.1111/age.12918. Epub 2020 Feb 14. Anim Genet. 2020. PMID: 32060960
Fine-scale empirical data on niche divergence and homeolog expression patterns in an allopolyploid and its diploid progenitor species.
Akiyama R, Sun J, Hatakeyama M, Lischer HEL, Briskine RV, Hay A, Gan X, Tsiantis M, Kudoh H, Kanaoka MM, Sese J, Shimizu KK, Shimizu-Inatsugi R. Akiyama R, et al. Among authors: lischer hel. New Phytol. 2020 Nov 22. doi: 10.1111/nph.17101. Online ahead of print. New Phytol. 2020. PMID: 33222195
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