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On the performance of de novo pathway enrichment.
Batra R, Alcaraz N, Gitzhofer K, Pauling J, Ditzel HJ, Hellmuth M, Baumbach J, List M. Batra R, et al. Among authors: list m. NPJ Syst Biol Appl. 2017 Mar 3;3:6. doi: 10.1038/s41540-017-0007-2. eCollection 2017. NPJ Syst Biol Appl. 2017. PMID: 28649433 Free PMC article.
Efficient sample tracking with OpenLabFramework.
List M, Schmidt S, Trojnar J, Thomas J, Thomassen M, Kruse TA, Tan Q, Baumbach J, Mollenhauer J. List M, et al. Sci Rep. 2014 Mar 4;4:4278. doi: 10.1038/srep04278. Sci Rep. 2014. PMID: 24589879 Free PMC article.
Microarray R-based analysis of complex lysate experiments with MIRACLE.
List M, Block I, Pedersen ML, Christiansen H, Schmidt S, Thomassen M, Tan Q, Baumbach J, Mollenhauer J. List M, et al. Bioinformatics. 2014 Sep 1;30(17):i631-8. doi: 10.1093/bioinformatics/btu473. Bioinformatics. 2014. PMID: 25161257 Free PMC article.
KeyPathwayMinerWeb: online multi-omics network enrichment.
List M, Alcaraz N, Dissing-Hansen M, Ditzel HJ, Mollenhauer J, Baumbach J. List M, et al. Nucleic Acids Res. 2016 Jul 8;44(W1):W98-W104. doi: 10.1093/nar/gkw373. Epub 2016 May 5. Nucleic Acids Res. 2016. PMID: 27150809 Free PMC article.
Comprehensive analysis of high-throughput screens with HiTSeekR.
List M, Schmidt S, Christiansen H, Rehmsmeier M, Tan Q, Mollenhauer J, Baumbach J. List M, et al. Nucleic Acids Res. 2016 Aug 19;44(14):6639-48. doi: 10.1093/nar/gkw554. Epub 2016 Jun 21. Nucleic Acids Res. 2016. PMID: 27330136 Free PMC article.
Robust de novo pathway enrichment with KeyPathwayMiner 5.
Alcaraz N, List M, Dissing-Hansen M, Rehmsmeier M, Tan Q, Mollenhauer J, Ditzel HJ, Baumbach J. Alcaraz N, et al. Among authors: list m. F1000Res. 2016 Jun 28;5:1531. doi: 10.12688/f1000research.9054.1. eCollection 2016. F1000Res. 2016. PMID: 27540470 Free PMC article.
De novo pathway-based biomarker identification.
Alcaraz N, List M, Batra R, Vandin F, Ditzel HJ, Baumbach J. Alcaraz N, et al. Among authors: list m. Nucleic Acids Res. 2017 Sep 19;45(16):e151. doi: 10.1093/nar/gkx642. Nucleic Acids Res. 2017. PMID: 28934488 Free PMC article.
224 results