Liu CM - Search Results

1

SOAP3: ultra-fast GPU-based parallel alignment tool for short reads.

Liu CM, Wong T, Wu E, Luo R, Yiu SM, Li Y, Wang B, Yu C, Chu X, Zhao K, Li R, Lam TW. Liu CM, et al. Bioinformatics. 2012 Mar 15;28(6):878-9. doi: 10.1093/bioinformatics/bts061. Epub 2012 Jan 28. Bioinformatics. 2012. PMID: 22285832

2

SOAP3-dp: fast, accurate and sensitive GPU-based short read aligner.

Luo R, Wong T, Zhu J, Liu CM, Zhu X, Wu E, Lee LK, Lin H, Zhu W, Cheung DW, Ting HF, Yiu SM, Peng S, Yu C, Li Y, Li R, Lam TW. Luo R, et al. Among authors: liu cm. PLoS One. 2013 May 31;8(5):e65632. doi: 10.1371/journal.pone.0065632. Print 2013. PLoS One. 2013. PMID: 23741504 Free PMC article.

3

MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph.

Li D, Liu CM, Luo R, Sadakane K, Lam TW. Li D, et al. Among authors: liu cm. Bioinformatics. 2015 May 15;31(10):1674-6. doi: 10.1093/bioinformatics/btv033. Epub 2015 Jan 20. Bioinformatics. 2015. PMID: 25609793 Free article.

4

BASE: a practical de novo assembler for large genomes using long NGS reads.

Liu B, Liu CM, Li D, Li Y, Ting HF, Yiu SM, Luo R, Lam TW. Liu B, et al. Among authors: liu cm. BMC Genomics. 2016 Aug 31;17 Suppl 5(Suppl 5):499. doi: 10.1186/s12864-016-2829-5. BMC Genomics. 2016. PMID: 27586129 Free PMC article.

5

BALSA: integrated secondary analysis for whole-genome and whole-exome sequencing, accelerated by GPU.

Luo R, Wong YL, Law WC, Lee LK, Cheung J, Liu CM, Lam TW. Luo R, et al. Among authors: liu cm. PeerJ. 2014 Jun 3;2:e421. doi: 10.7717/peerj.421. eCollection 2014. PeerJ. 2014. PMID: 24949238 Free PMC article.

6

MICA: A fast short-read aligner that takes full advantage of Many Integrated Core Architecture (MIC).

Luo R, Cheung J, Wu E, Wang H, Chan SH, Law WC, He G, Yu C, Liu CM, Zhou D, Li Y, Li R, Wang J, Zhu X, Peng S, Lam TW. Luo R, et al. Among authors: liu cm. BMC Bioinformatics. 2015;16 Suppl 7(Suppl 7):S10. doi: 10.1186/1471-2105-16-S7-S10. Epub 2015 Apr 23. BMC Bioinformatics. 2015. PMID: 25952019 Free PMC article.

7

MEGAHIT v1.0: A fast and scalable metagenome assembler driven by advanced methodologies and community practices.

Li D, Luo R, Liu CM, Leung CM, Ting HF, Sadakane K, Yamashita H, Lam TW. Li D, et al. Among authors: liu cm. Methods. 2016 Jun 1;102:3-11. doi: 10.1016/j.ymeth.2016.02.020. Epub 2016 Mar 21. Methods. 2016. PMID: 27012178 Review.

8

Building a Chinese pan-genome of 486 individuals.

Li Q, Tian S, Yan B, Liu CM, Lam TW, Li R, Luo R. Li Q, et al. Among authors: liu cm. Commun Biol. 2021 Aug 30;4(1):1016. doi: 10.1038/s42003-021-02556-6. Commun Biol. 2021. PMID: 34462542 Free PMC article.

9

CONNET: Accurate Genome Consensus in Assembling Nanopore Sequencing Data via Deep Learning.

Zhang Y, Liu CM, Leung HCM, Luo R, Lam TW. Zhang Y, et al. Among authors: liu cm. iScience. 2020 May 22;23(5):101128. doi: 10.1016/j.isci.2020.101128. Epub 2020 May 1. iScience. 2020. PMID: 32422594 Free PMC article.

10

HKG: an open genetic variant database of 205 Hong Kong cantonese exomes.

Ou M, Leung HC, Leung AW, Luk HM, Yan B, Liu CM, Tong TM, Mok MT, Ko WM, Law WC, Lam TW, Lo IF, Luo R. Ou M, et al. Among authors: liu cm. NAR Genom Bioinform. 2022 Feb 8;4(1):lqac005. doi: 10.1093/nargab/lqac005. eCollection 2022 Mar. NAR Genom Bioinform. 2022. PMID: 35156024 Free PMC article.

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