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The PredictProtein server.
Rost B, Yachdav G, Liu J. Rost B, et al. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W321-6. doi: 10.1093/nar/gkh377. Nucleic Acids Res. 2004. PMID: 15215403 Free PMC article.
Automatic target selection for structural genomics on eukaryotes.
Liu J, Hegyi H, Acton TB, Montelione GT, Rost B. Liu J, et al. Proteins. 2004 Aug 1;56(2):188-200. doi: 10.1002/prot.20012. Proteins. 2004. PMID: 15211504
Membrane protein prediction methods.
Punta M, Forrest LR, Bigelow H, Kernytsky A, Liu J, Rost B. Punta M, et al. Methods. 2007 Apr;41(4):460-74. doi: 10.1016/j.ymeth.2006.07.026. Methods. 2007. PMID: 17367718 Free PMC article. Review.
Structural genomics is the largest contributor of novel structural leverage.
Nair R, Liu J, Soong TT, Acton TB, Everett JK, Kouranov A, Fiser A, Godzik A, Jaroszewski L, Orengo C, Montelione GT, Rost B. Nair R, et al. J Struct Funct Genomics. 2009 Apr;10(2):181-91. doi: 10.1007/s10969-008-9055-6. Epub 2009 Feb 5. J Struct Funct Genomics. 2009. PMID: 19194785 Free PMC article.
Success in increasing novel leverage (defined in Liu et al. in Nat Biotechnol 25:849-851, 2007) has resulted from systematic targeting of large families. ...
Success in increasing novel leverage (defined in Liu et al. in Nat Biotechnol 25:849-851, 2007) has resulted from systematic targetin …
Natively unstructured loops differ from other loops.
Schlessinger A, Liu J, Rost B. Schlessinger A, et al. PLoS Comput Biol. 2007 Jul;3(7):e140. doi: 10.1371/journal.pcbi.0030140. PLoS Comput Biol. 2007. PMID: 17658943 Free PMC article.
Sequence-based prediction of protein domains.
Liu J, Rost B. Liu J, et al. Nucleic Acids Res. 2004 Jul 7;32(12):3522-30. doi: 10.1093/nar/gkh684. Print 2004. Nucleic Acids Res. 2004. PMID: 15240828 Free PMC article.
CHOP: parsing proteins into structural domains.
Liu J, Rost B. Liu J, et al. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W569-71. doi: 10.1093/nar/gkh481. Nucleic Acids Res. 2004. PMID: 15215452 Free PMC article.
Predicting transmembrane beta-barrels in proteomes.
Bigelow HR, Petrey DS, Liu J, Przybylski D, Rost B. Bigelow HR, et al. Nucleic Acids Res. 2004 May 11;32(8):2566-77. doi: 10.1093/nar/gkh580. Print 2004. Nucleic Acids Res. 2004. PMID: 15141026 Free PMC article.
CHOP proteins into structural domain-like fragments.
Liu J, Rost B. Liu J, et al. Proteins. 2004 May 15;55(3):678-88. doi: 10.1002/prot.20095. Proteins. 2004. PMID: 15103630
NORSp: Predictions of long regions without regular secondary structure.
Liu J, Rost B. Liu J, et al. Nucleic Acids Res. 2003 Jul 1;31(13):3833-5. doi: 10.1093/nar/gkg515. Nucleic Acids Res. 2003. PMID: 12824431 Free PMC article.
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