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SATe-II: very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees.
Liu K, Warnow TJ, Holder MT, Nelesen SM, Yu J, Stamatakis AP, Linder CR. Liu K, et al. Syst Biol. 2012 Jan;61(1):90-106. doi: 10.1093/sysbio/syr095. Epub 2011 Dec 1. Syst Biol. 2012. PMID: 22139466
Coestimation of alignments and trees has been attempted but currently only SATe estimates reasonably accurate trees and alignments for large data sets in practical time frames (Liu K., Raghavan S., Nelesen S., Linder C.R., Warnow T. 2009b. Rapid and accurate large-s …
Coestimation of alignments and trees has been attempted but currently only SATe estimates reasonably accurate trees and alignments for large …
DACTAL: divide-and-conquer trees (almost) without alignments.
Nelesen S, Liu K, Wang LS, Linder CR, Warnow T. Nelesen S, et al. Among authors: liu k. Bioinformatics. 2012 Jun 15;28(12):i274-82. doi: 10.1093/bioinformatics/bts218. Bioinformatics. 2012. PMID: 22689772 Free PMC article.
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