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55,871 results
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DOCKGROUND protein-protein docking decoy set.
Liu S, Gao Y, Vakser IA. Liu S, et al. Bioinformatics. 2008 Nov 15;24(22):2634-5. doi: 10.1093/bioinformatics/btn497. Epub 2008 Sep 23. Bioinformatics. 2008. PMID: 18812365 Free PMC article.
Template-Based Modeling of Protein-RNA Interactions.
Zheng J, Kundrotas PJ, Vakser IA, Liu S. Zheng J, et al. Among authors: liu s. PLoS Comput Biol. 2016 Sep 23;12(9):e1005120. doi: 10.1371/journal.pcbi.1005120. eCollection 2016 Sep. PLoS Comput Biol. 2016. PMID: 27662342 Free PMC article.
The dataset for protein-RNA binding affinity.
Yang X, Li H, Huang Y, Liu S. Yang X, et al. Among authors: liu s. Protein Sci. 2013 Dec;22(12):1808-11. doi: 10.1002/pro.2383. Protein Sci. 2013. PMID: 24127340 Free PMC article.
Preorientation of protein and RNA just before contacting.
Guo D, Liu S, Huang Y, Xiao Y. Guo D, et al. Among authors: liu s. J Biomol Struct Dyn. 2013;31(7):716-28. doi: 10.1080/07391102.2012.708604. Epub 2012 Aug 22. J Biomol Struct Dyn. 2013. PMID: 22908909
Community-wide assessment of protein-interface modeling suggests improvements to design methodology.
Fleishman SJ, Whitehead TA, Strauch EM, Corn JE, Qin S, Zhou HX, Mitchell JC, Demerdash ON, Takeda-Shitaka M, Terashi G, Moal IH, Li X, Bates PA, Zacharias M, Park H, Ko JS, Lee H, Seok C, Bourquard T, Bernauer J, Poupon A, Azé J, Soner S, Ovali SK, Ozbek P, Tal NB, Haliloglu T, Hwang H, Vreven T, Pierce BG, Weng Z, Pérez-Cano L, Pons C, Fernández-Recio J, Jiang F, Yang F, Gong X, Cao L, Xu X, Liu B, Wang P, Li C, Wang C, Robert CH, Guharoy M, Liu S, Huang Y, Li L, Guo D, Chen Y, Xiao Y, London N, Itzhaki Z, Schueler-Furman O, Inbar Y, Potapov V, Cohen M, Schreiber G, Tsuchiya Y, Kanamori E, Standley DM, Nakamura H, Kinoshita K, Driggers CM, Hall RG, Morgan JL, Hsu VL, Zhan J, Yang Y, Zhou Y, Kastritis PL, Bonvin AM, Zhang W, Camacho CJ, Kilambi KP, Sircar A, Gray JJ, Ohue M, Uchikoga N, Matsuzaki Y, Ishida T, Akiyama Y, Khashan R, Bush S, Fouches D, Tropsha A, Esquivel-Rodríguez J, Kihara D, Stranges PB, Jacak R, Kuhlman B, Huang SY, Zou X, Wodak SJ, Janin J, Baker D. Fleishman SJ, et al. Among authors: liu s, liu b. J Mol Biol. 2011 Nov 25;414(2):289-302. doi: 10.1016/j.jmb.2011.09.031. Epub 2011 Sep 29. J Mol Biol. 2011. PMID: 22001016 Free PMC article.
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