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DOCKGROUND protein-protein docking decoy set.
Liu S, Gao Y, Vakser IA. Liu S, et al. Bioinformatics. 2008 Nov 15;24(22):2634-5. doi: 10.1093/bioinformatics/btn497. Epub 2008 Sep 23. Bioinformatics. 2008. PMID: 18812365 Free PMC article.
Preorientation of protein and RNA just before contacting.
Guo D, Liu S, Huang Y, Xiao Y. Guo D, et al. Among authors: liu s. J Biomol Struct Dyn. 2013;31(7):716-28. doi: 10.1080/07391102.2012.708604. Epub 2012 Aug 22. J Biomol Struct Dyn. 2013. PMID: 22908909
The dataset for protein-RNA binding affinity.
Yang X, Li H, Huang Y, Liu S. Yang X, et al. Among authors: liu s. Protein Sci. 2013 Dec;22(12):1808-11. doi: 10.1002/pro.2383. Protein Sci. 2013. PMID: 24127340 Free PMC article.
Template-Based Modeling of Protein-RNA Interactions.
Zheng J, Kundrotas PJ, Vakser IA, Liu S. Zheng J, et al. Among authors: liu s. PLoS Comput Biol. 2016 Sep 23;12(9):e1005120. doi: 10.1371/journal.pcbi.1005120. eCollection 2016 Sep. PLoS Comput Biol. 2016. PMID: 27662342 Free PMC article.
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