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Unification of miRNA and isomiR research: the mirGFF3 format and the mirtop API.
Desvignes T, Loher P, Eilbeck K, Ma J, Urgese G, Fromm B, Sydes J, Aparicio-Puerta E, Barrera V, Espín R, Thibord F, Bofill-De Ros X, Londin E, Telonis AG, Ficarra E, Friedländer MR, Postlethwait JH, Rigoutsos I, Hackenberg M, Vlachos IS, Halushka MK, Pantano L. Desvignes T, et al. Among authors: loher p. Bioinformatics. 2020 Feb 1;36(3):698-703. doi: 10.1093/bioinformatics/btz675. Bioinformatics. 2020. PMID: 31504201 Free PMC article.
The complex transcriptional landscape of the anucleate human platelet.
Bray PF, McKenzie SE, Edelstein LC, Nagalla S, Delgrosso K, Ertel A, Kupper J, Jing Y, Londin E, Loher P, Chen HW, Fortina P, Rigoutsos I. Bray PF, et al. Among authors: loher p. BMC Genomics. 2013 Jan 16;14:1. doi: 10.1186/1471-2164-14-1. BMC Genomics. 2013. PMID: 23323973 Free PMC article.
Nuclear and mitochondrial tRNA-lookalikes in the human genome.
Telonis AG, Loher P, Kirino Y, Rigoutsos I. Telonis AG, et al. Among authors: loher p. Front Genet. 2014 Oct 8;5:344. doi: 10.3389/fgene.2014.00344. eCollection 2014. Front Genet. 2014. PMID: 25339973 Free PMC article.
Analysis of 13 cell types reveals evidence for the expression of numerous novel primate- and tissue-specific microRNAs.
Londin E, Loher P, Telonis AG, Quann K, Clark P, Jing Y, Hatzimichael E, Kirino Y, Honda S, Lally M, Ramratnam B, Comstock CE, Knudsen KE, Gomella L, Spaeth GL, Hark L, Katz LJ, Witkiewicz A, Rostami A, Jimenez SA, Hollingsworth MA, Yeh JJ, Shaw CA, McKenzie SE, Bray P, Nelson PT, Zupo S, Van Roosbroeck K, Keating MJ, Calin GA, Yeo C, Jimbo M, Cozzitorto J, Brody JR, Delgrosso K, Mattick JS, Fortina P, Rigoutsos I. Londin E, et al. Among authors: loher p. Proc Natl Acad Sci U S A. 2015 Mar 10;112(10):E1106-15. doi: 10.1073/pnas.1420955112. Epub 2015 Feb 23. Proc Natl Acad Sci U S A. 2015. PMID: 25713380 Free PMC article.
42 results