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COPS: detecting co-occurrence and spatial arrangement of transcription factor binding motifs in genome-wide datasets.
Ha N, Polychronidou M, Lohmann I. Ha N, et al. Among authors: lohmann i. PLoS One. 2012;7(12):e52055. doi: 10.1371/journal.pone.0052055. Epub 2012 Dec 18. PLoS One. 2012. PMID: 23272209 Free PMC article.
Multifactorial regulation of a hox target gene.
Stöbe P, Stein MA, Habring-Müller A, Bezdan D, Fuchs AL, Hueber SD, Wu H, Lohmann I. Stöbe P, et al. Among authors: lohmann i. PLoS Genet. 2009 Mar;5(3):e1000412. doi: 10.1371/journal.pgen.1000412. Epub 2009 Mar 13. PLoS Genet. 2009. PMID: 19282966 Free PMC article.
Vectors for efficient and high-throughput construction of fluorescent drosophila reporters using the PhiC31 site-specific integration system.
Boy AL, Zhai Z, Habring-Müller A, Kussler-Schneider Y, Kaspar P, Lohmann I. Boy AL, et al. Among authors: lohmann i. Genesis. 2010 Jul;48(7):452-6. doi: 10.1002/dvg.20637. Genesis. 2010. PMID: 20506180
Antagonistic regulation of apoptosis and differentiation by the Cut transcription factor represents a tumor-suppressing mechanism in Drosophila.
Zhai Z, Ha N, Papagiannouli F, Hamacher-Brady A, Brady N, Sorge S, Bezdan D, Lohmann I. Zhai Z, et al. Among authors: lohmann i. PLoS Genet. 2012;8(3):e1002582. doi: 10.1371/journal.pgen.1002582. Epub 2012 Mar 15. PLoS Genet. 2012. PMID: 22438831 Free PMC article.
Shaping the niche: lessons from the Drosophila testis and other model systems.
Papagiannouli F, Lohmann I. Papagiannouli F, et al. Among authors: lohmann i. Biotechnol J. 2012 Jun;7(6):723-36. doi: 10.1002/biot.201100352. Epub 2012 Apr 5. Biotechnol J. 2012. PMID: 22488937 Review.
The cis-regulatory code of Hox function in Drosophila.
Sorge S, Ha N, Polychronidou M, Friedrich J, Bezdan D, Kaspar P, Schaefer MH, Ossowski S, Henz SR, Mundorf J, Rätzer J, Papagiannouli F, Lohmann I. Sorge S, et al. Among authors: lohmann i. EMBO J. 2012 Aug 1;31(15):3323-33. doi: 10.1038/emboj.2012.179. Epub 2012 Jul 10. EMBO J. 2012. PMID: 22781127 Free PMC article.
Cell-type specific cis-regulatory networks: insights from Hox transcription factors.
Polychronidou M, Lohmann I. Polychronidou M, et al. Among authors: lohmann i. Fly (Austin). 2013 Jan-Mar;7(1):13-7. doi: 10.4161/fly.22939. Epub 2012 Dec 6. Fly (Austin). 2013. PMID: 23221502 Free PMC article.
The Hox gene Abd-B controls stem cell niche function in the Drosophila testis.
Papagiannouli F, Schardt L, Grajcarek J, Ha N, Lohmann I. Papagiannouli F, et al. Among authors: lohmann i. Dev Cell. 2014 Jan 27;28(2):189-202. doi: 10.1016/j.devcel.2013.12.016. Dev Cell. 2014. PMID: 24480643
Hox transcriptomics in Drosophila embryos.
Polychronidou M, Lohmann I. Polychronidou M, et al. Among authors: lohmann i. Methods Mol Biol. 2014;1196:197-208. doi: 10.1007/978-1-4939-1242-1_12. Methods Mol Biol. 2014. PMID: 25151165
Toward a new twist in Hox and TALE DNA-binding specificity.
Merabet S, Lohmann I. Merabet S, et al. Among authors: lohmann i. Dev Cell. 2015 Feb 9;32(3):259-61. doi: 10.1016/j.devcel.2015.01.030. Dev Cell. 2015. PMID: 25669880
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