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16 results
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iMODFIT: efficient and robust flexible fitting based on vibrational analysis in internal coordinates.
Lopéz-Blanco JR, Chacón P. Lopéz-Blanco JR, et al. J Struct Biol. 2013 Nov;184(2):261-70. doi: 10.1016/j.jsb.2013.08.010. Epub 2013 Aug 30. J Struct Biol. 2013. PMID: 23999189
Structure of promoter-bound TFIID and model of human pre-initiation complex assembly.
Louder RK, He Y, López-Blanco JR, Fang J, Chacón P, Nogales E. Louder RK, et al. Among authors: lopez blanco jr. Nature. 2016 Mar 31;531(7596):604-9. doi: 10.1038/nature17394. Epub 2016 Mar 23. Nature. 2016. PMID: 27007846 Free PMC article.
iMODS: internal coordinates normal mode analysis server.
López-Blanco JR, Aliaga JI, Quintana-Ortí ES, Chacón P. López-Blanco JR, et al. Nucleic Acids Res. 2014 Jul;42(Web Server issue):W271-6. doi: 10.1093/nar/gku339. Epub 2014 Apr 25. Nucleic Acids Res. 2014. PMID: 24771341 Free PMC article.
FRODOCK 2.0: fast protein-protein docking server.
Ramírez-Aportela E, López-Blanco JR, Chacón P. Ramírez-Aportela E, et al. Among authors: lopez blanco jr. Bioinformatics. 2016 Aug 1;32(15):2386-8. doi: 10.1093/bioinformatics/btw141. Epub 2016 Mar 12. Bioinformatics. 2016. PMID: 27153583
RCD+: Fast loop modeling server.
López-Blanco JR, Canosa-Valls AJ, Li Y, Chacón P. López-Blanco JR, et al. Nucleic Acids Res. 2016 Jul 8;44(W1):W395-400. doi: 10.1093/nar/gkw395. Epub 2016 May 5. Nucleic Acids Res. 2016. PMID: 27151199 Free PMC article.
FRODOCK: a new approach for fast rotational protein-protein docking.
Garzon JI, Lopéz-Blanco JR, Pons C, Kovacs J, Abagyan R, Fernandez-Recio J, Chacon P. Garzon JI, et al. Bioinformatics. 2009 Oct 1;25(19):2544-51. doi: 10.1093/bioinformatics/btp447. Epub 2009 Jul 20. Bioinformatics. 2009. PMID: 19620099 Free PMC article.
iMod: multipurpose normal mode analysis in internal coordinates.
Lopéz-Blanco JR, Garzón JI, Chacón P. Lopéz-Blanco JR, et al. Bioinformatics. 2011 Oct 15;27(20):2843-50. doi: 10.1093/bioinformatics/btr497. Epub 2011 Aug 27. Bioinformatics. 2011. PMID: 21873636
New generation of elastic network models.
López-Blanco JR, Chacón P. López-Blanco JR, et al. Curr Opin Struct Biol. 2016 Apr;37:46-53. doi: 10.1016/j.sbi.2015.11.013. Epub 2015 Dec 21. Curr Opin Struct Biol. 2016. PMID: 26716577 Review.
Architecture of the pontin/reptin complex, essential in the assembly of several macromolecular complexes.
Torreira E, Jha S, López-Blanco JR, Arias-Palomo E, Chacón P, Cañas C, Ayora S, Dutta A, Llorca O. Torreira E, et al. Structure. 2008 Oct 8;16(10):1511-20. doi: 10.1016/j.str.2008.08.009. Structure. 2008. PMID: 18940606 Free PMC article.
Understanding nucleotide-regulated FtsZ filament dynamics and the monomer assembly switch with large-scale atomistic simulations.
Ramírez-Aportela E, López-Blanco JR, Andreu JM, Chacón P. Ramírez-Aportela E, et al. Among authors: lopez blanco jr. Biophys J. 2014 Nov 4;107(9):2164-76. doi: 10.1016/j.bpj.2014.09.033. Biophys J. 2014. PMID: 25418101 Free PMC article.
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