Lopéz-Blanco JR - Search Results

1

iMODFIT: efficient and robust flexible fitting based on vibrational analysis in internal coordinates.

Lopéz-Blanco JR, Chacón P. Lopéz-Blanco JR, et al. J Struct Biol. 2013 Nov;184(2):261-70. doi: 10.1016/j.jsb.2013.08.010. Epub 2013 Aug 30. J Struct Biol. 2013. PMID: 23999189

2

Architecture of the pontin/reptin complex, essential in the assembly of several macromolecular complexes.

Torreira E, Jha S, López-Blanco JR, Arias-Palomo E, Chacón P, Cañas C, Ayora S, Dutta A, Llorca O. Torreira E, et al. Structure. 2008 Oct 8;16(10):1511-20. doi: 10.1016/j.str.2008.08.009. Structure. 2008. PMID: 18940606 Free PMC article.

3

Plasmid replication initiator RepB forms a hexamer reminiscent of ring helicases and has mobile nuclease domains.

Boer DR, Ruíz-Masó JA, López-Blanco JR, Blanco AG, Vives-Llàcer M, Chacón P, Usón I, Gomis-Rüth FX, Espinosa M, Llorca O, del Solar G, Coll M. Boer DR, et al. EMBO J. 2009 Jun 3;28(11):1666-78. doi: 10.1038/emboj.2009.125. EMBO J. 2009. PMID: 19440202 Free PMC article.

4

FRODOCK: a new approach for fast rotational protein-protein docking.

Garzon JI, Lopéz-Blanco JR, Pons C, Kovacs J, Abagyan R, Fernandez-Recio J, Chacon P. Garzon JI, et al. Bioinformatics. 2009 Oct 1;25(19):2544-51. doi: 10.1093/bioinformatics/btp447. Epub 2009 Jul 20. Bioinformatics. 2009. PMID: 19620099 Free PMC article.

5

iMod: multipurpose normal mode analysis in internal coordinates.

Lopéz-Blanco JR, Garzón JI, Chacón P. Lopéz-Blanco JR, et al. Bioinformatics. 2011 Oct 15;27(20):2843-50. doi: 10.1093/bioinformatics/btr497. Epub 2011 Aug 27. Bioinformatics. 2011. PMID: 21873636

6

Formation of an intricate helical bundle dictates the assembly of the 26S proteasome lid.

Estrin E, Lopez-Blanco JR, Chacón P, Martin A. Estrin E, et al. Structure. 2013 Sep 3;21(9):1624-35. doi: 10.1016/j.str.2013.06.023. Epub 2013 Aug 1. Structure. 2013. PMID: 23911091 Free article.

7

iMODS: internal coordinates normal mode analysis server.

López-Blanco JR, Aliaga JI, Quintana-Ortí ES, Chacón P. López-Blanco JR, et al. Nucleic Acids Res. 2014 Jul;42(Web Server issue):W271-6. doi: 10.1093/nar/gku339. Epub 2014 Apr 25. Nucleic Acids Res. 2014. PMID: 24771341 Free PMC article.

8

Understanding nucleotide-regulated FtsZ filament dynamics and the monomer assembly switch with large-scale atomistic simulations.

Ramírez-Aportela E, López-Blanco JR, Andreu JM, Chacón P. Ramírez-Aportela E, et al. Biophys J. 2014 Nov 4;107(9):2164-76. doi: 10.1016/j.bpj.2014.09.033. Biophys J. 2014. PMID: 25418101 Free PMC article.

9

Approaching Elastic Network Models to Molecular Dynamics Flexibility.

Orellana L, Rueda M, Ferrer-Costa C, Lopez-Blanco JR, Chacón P, Orozco M. Orellana L, et al. J Chem Theory Comput. 2010 Sep 14;6(9):2910-23. doi: 10.1021/ct100208e. J Chem Theory Comput. 2010. PMID: 26616090

10

New generation of elastic network models.

López-Blanco JR, Chacón P. López-Blanco JR, et al. Curr Opin Struct Biol. 2016 Apr;37:46-53. doi: 10.1016/j.sbi.2015.11.013. Epub 2015 Dec 21. Curr Opin Struct Biol. 2016. PMID: 26716577 Review.

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