Love MI - Search Results

1

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.

Love MI, Huber W, Anders S. Love MI, et al. Genome Biol. 2014;15(12):550. doi: 10.1186/s13059-014-0550-8. Genome Biol. 2014. PMID: 25516281 Free PMC article.

2

MAGeCK enables robust identification of essential genes from genome-scale CRISPR/Cas9 knockout screens.

Li W, Xu H, Xiao T, Cong L, Love MI, Zhang F, Irizarry RA, Liu JS, Brown M, Liu XS. Li W, et al. Among authors: love mi. Genome Biol. 2014;15(12):554. doi: 10.1186/s13059-014-0554-4. Genome Biol. 2014. PMID: 25476604 Free PMC article.

3

A benchmark for RNA-seq quantification pipelines.

Teng M, Love MI, Davis CA, Djebali S, Dobin A, Graveley BR, Li S, Mason CE, Olson S, Pervouchine D, Sloan CA, Wei X, Zhan L, Irizarry RA. Teng M, et al. Among authors: love mi. Genome Biol. 2016 Apr 23;17:74. doi: 10.1186/s13059-016-0940-1. Genome Biol. 2016. PMID: 27107712 Free PMC article.

4

Erratum to: A benchmark for RNA-seq quantification pipelines.

Teng M, Love MI, Davis CA, Djebali S, Dobin A, Graveley BR, Li S, Mason CE, Olson S, Pervouchine D, Sloan CA, Wei X, Zhan L, Irizarry RA. Teng M, et al. Among authors: love mi. Genome Biol. 2016 May 23;17(1):107. doi: 10.1186/s13059-016-0986-0. Genome Biol. 2016. PMID: 27215799 Free PMC article. No abstract available.

5

Modeling of RNA-seq fragment sequence bias reduces systematic errors in transcript abundance estimation.

Love MI, Hogenesch JB, Irizarry RA. Love MI, et al. Nat Biotechnol. 2016 Dec;34(12):1287-1291. doi: 10.1038/nbt.3682. Epub 2016 Sep 26. Nat Biotechnol. 2016. PMID: 27669167 Free PMC article.

6

Flexible expressed region analysis for RNA-seq with derfinder.

Collado-Torres L, Nellore A, Frazee AC, Wilks C, Love MI, Langmead B, Irizarry RA, Leek JT, Jaffe AE. Collado-Torres L, et al. Among authors: love mi. Nucleic Acids Res. 2017 Jan 25;45(2):e9. doi: 10.1093/nar/gkw852. Epub 2016 Sep 29. Nucleic Acids Res. 2017. PMID: 27694310 Free PMC article.

7

Erratum to: A benchmark for RNA-seq quantification pipelines.

Teng M, Love MI, Davis CA, Djebali S, Dobin A, Graveley BR, Li S, Mason CE, Olson S, Pervouchine D, Sloan CA, Wei X, Zhan L, Irizarry RA. Teng M, et al. Among authors: love mi. Genome Biol. 2016 Sep 30;17(1):203. doi: 10.1186/s13059-016-1060-7. Genome Biol. 2016. PMID: 27716375 Free PMC article. No abstract available.

8

Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications.

Van den Berge K, Perraudeau F, Soneson C, Love MI, Risso D, Vert JP, Robinson MD, Dudoit S, Clement L. Van den Berge K, et al. Among authors: love mi. Genome Biol. 2018 Feb 26;19(1):24. doi: 10.1186/s13059-018-1406-4. Genome Biol. 2018. PMID: 29478411 Free PMC article.

9

Deletions of chromosomal regulatory boundaries are associated with congenital disease.

Ibn-Salem J, Köhler S, Love MI, Chung HR, Huang N, Hurles ME, Haendel M, Washington NL, Smedley D, Mungall CJ, Lewis SE, Ott CE, Bauer S, Schofield PN, Mundlos S, Spielmann M, Robinson PN. Ibn-Salem J, et al. Among authors: love mi. Genome Biol. 2014 Sep 4;15(9):423. doi: 10.1186/s13059-014-0423-1. Genome Biol. 2014. PMID: 25315429 Free PMC article.

10

Alignment and mapping methodology influence transcript abundance estimation.

Srivastava A, Malik L, Sarkar H, Zakeri M, Almodaresi F, Soneson C, Love MI, Kingsford C, Patro R. Srivastava A, et al. Among authors: love mi. Genome Biol. 2020 Sep 7;21(1):239. doi: 10.1186/s13059-020-02151-8. Genome Biol. 2020. PMID: 32894187 Free PMC article.

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