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Suppression subtractive hybridization.
Rebrikov DV, Desai SM, Siebert PD, Lukyanov SA. Rebrikov DV, et al. Methods Mol Biol. 2004;258:107-34. doi: 10.1385/1-59259-751-3:107. Methods Mol Biol. 2004. PMID: 14970460
Application of nonsense-mediated primer exclusion (NOPE) for preparation of unique molecular barcoded libraries.
Shagin DA, Turchaninova MA, Shagina IA, Shugay M, Zaretsky AR, Zueva OI, Bolotin DA, Lukyanov S, Chudakov DM. Shagin DA, et al. BMC Genomics. 2017 Jun 5;18(1):440. doi: 10.1186/s12864-017-3815-2. BMC Genomics. 2017. PMID: 28583065 Free PMC article.
Normalization of genomic DNA using duplex-specific nuclease.
Shagina I, Bogdanova E, Mamedov IZ, Lebedev Y, Lukyanov S, Shagin D. Shagina I, et al. Biotechniques. 2010 Jun;48(6):455-9. doi: 10.2144/000113422. Biotechniques. 2010. PMID: 20569220
A high-throughput assay for quantitative measurement of PCR errors.
Shagin DA, Shagina IA, Zaretsky AR, Barsova EV, Kelmanson IV, Lukyanov S, Chudakov DM, Shugay M. Shagin DA, et al. Sci Rep. 2017 Jun 2;7(1):2718. doi: 10.1038/s41598-017-02727-8. Sci Rep. 2017. PMID: 28578414 Free PMC article.
Towards error-free profiling of immune repertoires.
Shugay M, Britanova OV, Merzlyak EM, Turchaninova MA, Mamedov IZ, Tuganbaev TR, Bolotin DA, Staroverov DB, Putintseva EV, Plevova K, Linnemann C, Shagin D, Pospisilova S, Lukyanov S, Schumacher TN, Chudakov DM. Shugay M, et al. Nat Methods. 2014 Jun;11(6):653-5. doi: 10.1038/nmeth.2960. Epub 2014 May 4. Nat Methods. 2014. PMID: 24793455
Innovation: Photoactivatable fluorescent proteins.
Lukyanov KA, Chudakov DM, Lukyanov S, Verkhusha VV. Lukyanov KA, et al. Nat Rev Mol Cell Biol. 2005 Nov;6(11):885-91. doi: 10.1038/nrm1741. Nat Rev Mol Cell Biol. 2005. PMID: 16167053 Review.
A novel method for SNP detection using a new duplex-specific nuclease from crab hepatopancreas.
Shagin DA, Rebrikov DV, Kozhemyako VB, Altshuler IM, Shcheglov AS, Zhulidov PA, Bogdanova EA, Staroverov DB, Rasskazov VA, Lukyanov S. Shagin DA, et al. Genome Res. 2002 Dec;12(12):1935-42. doi: 10.1101/gr.547002. Genome Res. 2002. PMID: 12466298 Free PMC article.
GFP-like proteins as ubiquitous metazoan superfamily: evolution of functional features and structural complexity.
Shagin DA, Barsova EV, Yanushevich YG, Fradkov AF, Lukyanov KA, Labas YA, Semenova TN, Ugalde JA, Meyers A, Nunez JM, Widder EA, Lukyanov SA, Matz MV. Shagin DA, et al. Mol Biol Evol. 2004 May;21(5):841-50. doi: 10.1093/molbev/msh079. Epub 2004 Feb 12. Mol Biol Evol. 2004. PMID: 14963095
Normalization of full-length-enriched cDNA.
Bogdanova EA, Barsova EV, Shagina IA, Scheglov A, Anisimova V, Vagner LL, Lukyanov SA, Shagin DA. Bogdanova EA, et al. Methods Mol Biol. 2011;729:85-98. doi: 10.1007/978-1-61779-065-2_6. Methods Mol Biol. 2011. PMID: 21365485
Normalizing cDNA libraries.
Bogdanov EA, Shagina I, Barsova EV, Kelmanson I, Shagin DA, Lukyanov SA. Bogdanov EA, et al. Curr Protoc Mol Biol. 2010 Apr;Chapter 5:Unit 5.12.1-27. doi: 10.1002/0471142727.mb0512s90. Curr Protoc Mol Biol. 2010. PMID: 20373503
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