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Evolution of two-component signal transduction.
Koretke KK, Lupas AN, Warren PV, Rosenberg M, Brown JR. Koretke KK, et al. Among authors: lupas an. Mol Biol Evol. 2000 Dec;17(12):1956-70. doi: 10.1093/oxfordjournals.molbev.a026297. Mol Biol Evol. 2000. PMID: 11110912
These systems typically consist of a receptor histidine kinase, which reacts to an extracellular signal by phosphorylating a cytoplasmic response regulator, causing a change in cellular behavior. ...
These systems typically consist of a receptor histidine kinase, which reacts to an extracellular signal by phosphorylating a cytoplas …
Evolution of outer membrane beta-barrels from an ancestral beta beta hairpin.
Remmert M, Biegert A, Linke D, Lupas AN, Söding J. Remmert M, et al. Among authors: lupas an. Mol Biol Evol. 2010 Jun;27(6):1348-58. doi: 10.1093/molbev/msq017. Epub 2010 Jan 27. Mol Biol Evol. 2010. PMID: 20106904
Despite their obvious structural regularity, evidence for an origin by duplication or for a common ancestry has not been found. ...
Despite their obvious structural regularity, evidence for an origin by duplication or for a common ancestry has not been found. ...
Molecular evolution of proteasomes.
Volker C, Lupas AN. Volker C, et al. Among authors: lupas an. Curr Top Microbiol Immunol. 2002;268:1-22. doi: 10.1007/978-3-642-59414-4_1. Curr Top Microbiol Immunol. 2002. PMID: 12083003 Review.
On the evolution of protein folds: are similar motifs in different protein folds the result of convergence, insertion, or relics of an ancient peptide world?
Lupas AN, Ponting CP, Russell RB. Lupas AN, et al. J Struct Biol. 2001 May-Jun;134(2-3):191-203. doi: 10.1006/jsbi.2001.4393. J Struct Biol. 2001. PMID: 11551179 Review.
Results of performing an all-on-all comparison of known structures are described and compared with other recently published findings. ...
Results of performing an all-on-all comparison of known structures are described and compared with other recently published findings. …
Fold recognition using sequence and secondary structure information.
Koretke KK, Russell RB, Copley RR, Lupas AN. Koretke KK, et al. Among authors: lupas an. Proteins. 1999;Suppl 3:141-8. doi: 10.1002/(sici)1097-0134(1999)37:3+<141::aid-prot19>3.3.co;2-6. Proteins. 1999. PMID: 10526363
For each target, we expanded an initial sequence space, obtained through PSI-BLAST, by searching for statistically significant relationships to low-scoring sequences and then by searching for conserved sequence patterns. We then divided the proteins in the sequence space i …
For each target, we expanded an initial sequence space, obtained through PSI-BLAST, by searching for statistically significant relati …
Self-compartmentalizing proteases.
Lupas A, Flanagan JM, Tamura T, Baumeister W. Lupas A, et al. Trends Biochem Sci. 1997 Oct;22(10):399-404. doi: 10.1016/s0968-0004(97)01117-1. Trends Biochem Sci. 1997. PMID: 9357316 Review.
Genetic characterization of gram-positive homologs of the XerCD site-specific recombinases.
Chalker AF, Lupas A, Ingraham K, So CY, Lunsford RD, Li T, Bryant A, Holmes DJ, Marra A, Pearson SC, Ray J, Burnham MK, Palmer LM, Biswas S, Zalacain M. Chalker AF, et al. Among authors: lupas a. J Mol Microbiol Biotechnol. 2000 Apr;2(2):225-33. J Mol Microbiol Biotechnol. 2000. PMID: 10939248
Strikingly, the S. aureus xerD gene appears to be absolutely required for viability, and may therefore be the first example of an essential gene of the lambda integrase family. ...
Strikingly, the S. aureus xerD gene appears to be absolutely required for viability, and may therefore be the first example of an ess …
Phylogenetic analyses do not support horizontal gene transfers from bacteria to vertebrates.
Stanhope MJ, Lupas A, Italia MJ, Koretke KK, Volker C, Brown JR. Stanhope MJ, et al. Among authors: lupas a. Nature. 2001 Jun 21;411(6840):940-4. doi: 10.1038/35082058. Nature. 2001. PMID: 11418856
Novel molecular architecture of the multimeric archaeal PEP-synthase homologue (MAPS) from Staphylothermus marinus.
Cicicopol C, Peters J, Lupas A, Cejka Z, Müller SA, Golbik R, Pfeifer G, Lilie H, Engel A, Baumeister W. Cicicopol C, et al. Among authors: lupas a. J Mol Biol. 1999 Jul 2;290(1):347-61. doi: 10.1006/jmbi.1999.2878. J Mol Biol. 1999. PMID: 10388577
The 93.7 kDa monomers possess a pronounced tripartite domain structure and are arranged such that the N-terminal domains form an outer shell, the intermediate domains form an inner shell, and the C-terminal domains form a core structure responsible for the assembly …
The 93.7 kDa monomers possess a pronounced tripartite domain structure and are arranged such that the N-terminal domains form an oute …
Model structure of the prototypical non-fimbrial adhesin YadA of Yersinia enterocolitica.
Koretke KK, Szczesny P, Gruber M, Lupas AN. Koretke KK, et al. Among authors: lupas an. J Struct Biol. 2006 Aug;155(2):154-61. doi: 10.1016/j.jsb.2006.03.012. Epub 2006 Apr 3. J Struct Biol. 2006. PMID: 16675268
Non-fimbrial adhesins, such as Yersinia YadA, Moraxella UspA1 and A2, Haemophilus Hia and Hsf, or Bartonella BadA represent an important class of molecules by which pathogenic proteobacteria adhere to their hosts. ...
Non-fimbrial adhesins, such as Yersinia YadA, Moraxella UspA1 and A2, Haemophilus Hia and Hsf, or Bartonella BadA represent an import …
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