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Evolutionary mirages: selection on binding site composition creates the illusion of conserved grammars in Drosophila enhancers.

Lusk RW, Eisen MB. Lusk RW, et al. PLoS Genet. 2010 Jan 22;6(1):e1000829. doi: 10.1371/journal.pgen.1000829. PLoS Genet. 2010. PMID: 20107516 Free PMC article.

Spatial promoter recognition signatures may enhance transcription factor specificity in yeast.

Lusk RW, Eisen MB. Lusk RW, et al. PLoS One. 2013;8(1):e53778. doi: 10.1371/journal.pone.0053778. Epub 2013 Jan 8. PLoS One. 2013. PMID: 23320104 Free PMC article.

Use of an evolutionary model to provide evidence for a wide heterogeneity of required affinities between transcription factors and their binding sites in yeast.

Lusk RW, Eisen MB. Lusk RW, et al. Pac Symp Biocomput. 2008:489-500. Pac Symp Biocomput. 2008. PMID: 18229710 Free article.

Potential Direct Regulators of the Drosophila yellow Gene Identified by Yeast One-Hybrid and RNAi Screens.

Kalay G, Lusk R, Dome M, Hens K, Deplancke B, Wittkopp PJ. Kalay G, et al. G3 (Bethesda). 2016 Oct 13;6(10):3419-3430. doi: 10.1534/g3.116.032607. G3 (Bethesda). 2016. PMID: 27527791 Free PMC article.

Diverse and widespread contamination evident in the unmapped depths of high throughput sequencing data.

Lusk RW. Lusk RW. PLoS One. 2014 Oct 29;9(10):e110808. doi: 10.1371/journal.pone.0110808. eCollection 2014. PLoS One. 2014. PMID: 25354084 Free PMC article.

Organismal complexity, protein complexity, and gene duplicability.

Yang J, Lusk R, Li WH. Yang J, et al. Proc Natl Acad Sci U S A. 2003 Dec 23;100(26):15661-5. doi: 10.1073/pnas.2536672100. Epub 2003 Dec 5. Proc Natl Acad Sci U S A. 2003. PMID: 14660792 Free PMC article.

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