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Information content and scalability in signal transduction network reconstruction formats.
Mol Biosyst. 2013 Aug;9(8):1993-2004. doi: 10.1039/c3mb00005b. Epub 2013 May 2.
Mol Biosyst. 2013.
PMID: 23636168
Review.
Using rxncon to Develop Rule-Based Models.
Romers J, Thieme S, Münzner U, Krantz M.
Romers J, et al. Among authors: munzner u.
Methods Mol Biol. 2019;1945:71-118. doi: 10.1007/978-1-4939-9102-0_4.
Methods Mol Biol. 2019.
PMID: 30945243
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A scalable method for parameter-free simulation and validation of mechanistic cellular signal transduction network models.
Romers J, Thieme S, Münzner U, Krantz M.
Romers J, et al. Among authors: munzner u.
NPJ Syst Biol Appl. 2020 Jan 10;6:2. doi: 10.1038/s41540-019-0120-5. eCollection 2020.
NPJ Syst Biol Appl. 2020.
PMID: 31934349
Free PMC article.
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A comprehensive, mechanistically detailed, and executable model of the cell division cycle in Saccharomyces cerevisiae.
Münzner U, Klipp E, Krantz M.
Münzner U, et al.
Nat Commun. 2019 Mar 21;10(1):1308. doi: 10.1038/s41467-019-08903-w.
Nat Commun. 2019.
PMID: 30899000
Free PMC article.
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Identification of periodic attractors in Boolean networks using a priori information.
Münzner U, Mori T, Krantz M, Klipp E, Akutsu T.
Münzner U, et al.
PLoS Comput Biol. 2022 Jan 14;18(1):e1009702. doi: 10.1371/journal.pcbi.1009702. eCollection 2022 Jan.
PLoS Comput Biol. 2022.
PMID: 35030172
Free PMC article.
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A yeast cell cycle model integrating stress, signaling, and physiology.
Adler SO, Spiesser TW, Uschner F, Münzner U, Hahn J, Krantz M, Klipp E.
Adler SO, et al. Among authors: munzner u.
FEMS Yeast Res. 2022 Jun 30;22(1):foac026. doi: 10.1093/femsyr/foac026.
FEMS Yeast Res. 2022.
PMID: 35617157
Free PMC article.
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Common Attractors in Multiple Boolean Networks.
Cao Y, Pi W, Lin CY, Munzner U, Ohtomo M, Akutsu T.
Cao Y, et al. Among authors: munzner u.
IEEE/ACM Trans Comput Biol Bioinform. 2023 Sep-Oct;20(5):2862-2873. doi: 10.1109/TCBB.2023.3268795. Epub 2023 Oct 9.
IEEE/ACM Trans Comput Biol Bioinform. 2023.
PMID: 37079419
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