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Structure of the full-length Shaker potassium channel Kv1.2 by normal-mode-based X-ray crystallographic refinement.
Chen X, Wang Q, Ni F, Ma J. Chen X, et al. Among authors: ma j. Proc Natl Acad Sci U S A. 2010 Jun 22;107(25):11352-7. doi: 10.1073/pnas.1000142107. Epub 2010 Jun 3. Proc Natl Acad Sci U S A. 2010. PMID: 20534430 Free PMC article.
Intrinsic flexibility and gating mechanism of the potassium channel KcsA.
Shen Y, Kong Y, Ma J. Shen Y, et al. Among authors: ma j. Proc Natl Acad Sci U S A. 2002 Feb 19;99(4):1949-53. doi: 10.1073/pnas.042650399. Epub 2002 Feb 12. Proc Natl Acad Sci U S A. 2002. PMID: 11842204 Free PMC article.
Molecular dynamics analysis of a buckyball-antibody complex.
Noon WH, Kong Y, Ma J. Noon WH, et al. Among authors: ma j. Proc Natl Acad Sci U S A. 2002 Apr 30;99 Suppl 2(Suppl 2):6466-70. doi: 10.1073/pnas.022532599. Epub 2002 Mar 5. Proc Natl Acad Sci U S A. 2002. PMID: 11880600 Free PMC article.
Conformational pathways in the gating of Escherichia coli mechanosensitive channel.
Kong Y, Shen Y, Warth TE, Ma J. Kong Y, et al. Among authors: ma j. Proc Natl Acad Sci U S A. 2002 Apr 30;99(9):5999-6004. doi: 10.1073/pnas.092051099. Epub 2002 Apr 23. Proc Natl Acad Sci U S A. 2002. PMID: 11972047 Free PMC article.
Domain movements in human fatty acid synthase by quantized elastic deformational model.
Ming D, Kong Y, Wakil SJ, Brink J, Ma J. Ming D, et al. Among authors: ma j. Proc Natl Acad Sci U S A. 2002 Jun 11;99(12):7895-9. doi: 10.1073/pnas.112222299. Proc Natl Acad Sci U S A. 2002. PMID: 12060737 Free PMC article.
How to describe protein motion without amino acid sequence and atomic coordinates.
Ming D, Kong Y, Lambert MA, Huang Z, Ma J. Ming D, et al. Among authors: ma j. Proc Natl Acad Sci U S A. 2002 Jun 25;99(13):8620-5. doi: 10.1073/pnas.082148899. Proc Natl Acad Sci U S A. 2002. PMID: 12084922 Free PMC article.
A dynamic analysis of the rotation mechanism for conformational change in F(1)-ATPase.
Ma J, Flynn TC, Cui Q, Leslie AG, Walker JE, Karplus M. Ma J, et al. Structure. 2002 Jul;10(7):921-31. doi: 10.1016/s0969-2126(02)00789-x. Structure. 2002. PMID: 12121647
Substructure synthesis method for simulating large molecular complexes.
Ming D, Kong Y, Wu Y, Ma J. Ming D, et al. Among authors: ma j. Proc Natl Acad Sci U S A. 2003 Jan 7;100(1):104-9. doi: 10.1073/pnas.232588999. Epub 2002 Dec 23. Proc Natl Acad Sci U S A. 2003. PMID: 12518058 Free PMC article.
A structural-informatics approach for mining beta-sheets: locating sheets in intermediate-resolution density maps.
Kong Y, Ma J. Kong Y, et al. Among authors: ma j. J Mol Biol. 2003 Sep 12;332(2):399-413. doi: 10.1016/s0022-2836(03)00859-3. J Mol Biol. 2003. PMID: 12948490
Refinement of F-actin model against fiber diffraction data by long-range normal modes.
Wu Y, Ma J. Wu Y, et al. Among authors: ma j. Biophys J. 2004 Jan;86(1 Pt 1):116-24. doi: 10.1016/S0006-3495(04)74089-8. Biophys J. 2004. PMID: 14695255 Free PMC article.
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