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Page 1
Exploration of the spontaneous fluctuating activity of single enzyme molecules.
Schwabe A, Maarleveld TR, Bruggeman FJ. Schwabe A, et al. Among authors: maarleveld tr. FEBS Lett. 2013 Sep 2;587(17):2744-52. doi: 10.1016/j.febslet.2013.07.005. Epub 2013 Jul 12. FEBS Lett. 2013. PMID: 23850890 Free article.
Statistics and simulation of growth of single bacterial cells: illustrations with B. subtilis and E. coli.
van Heerden JH, Kempe H, Doerr A, Maarleveld T, Nordholt N, Bruggeman FJ. van Heerden JH, et al. Sci Rep. 2017 Nov 23;7(1):16094. doi: 10.1038/s41598-017-15895-4. Sci Rep. 2017. PMID: 29170466 Free PMC article.
Stochastic simulation of prokaryotic two-component signalling indicates stochasticity-induced active-state locking and growth-rate dependent bistability.
Wei K, Moinat M, Maarleveld TR, Bruggeman FJ. Wei K, et al. Among authors: maarleveld tr. Mol Biosyst. 2014 Jul 29;10(9):2338-46. doi: 10.1039/c4mb00264d. Mol Biosyst. 2014. PMID: 24955938
Mechanistic stochastic model of histone modification pattern formation.
Anink-Groenen LC, Maarleveld TR, Verschure PJ, Bruggeman FJ. Anink-Groenen LC, et al. Among authors: maarleveld tr. Epigenetics Chromatin. 2014 Oct 27;7(1):30. doi: 10.1186/1756-8935-7-30. eCollection 2014. Epigenetics Chromatin. 2014. PMID: 25408711 Free PMC article.
StochPy: a comprehensive, user-friendly tool for simulating stochastic biological processes.
Maarleveld TR, Olivier BG, Bruggeman FJ. Maarleveld TR, et al. PLoS One. 2013 Nov 18;8(11):e79345. doi: 10.1371/journal.pone.0079345. eCollection 2013. PLoS One. 2013. PMID: 24260203 Free PMC article.
Interplay between constraints, objectives, and optimality for genome-scale stoichiometric models.
Maarleveld TR, Wortel MT, Olivier BG, Teusink B, Bruggeman FJ. Maarleveld TR, et al. PLoS Comput Biol. 2015 Apr 7;11(4):e1004166. doi: 10.1371/journal.pcbi.1004166. eCollection 2015 Apr. PLoS Comput Biol. 2015. PMID: 25849486 Free PMC article.
Basic concepts and principles of stoichiometric modeling of metabolic networks.
Maarleveld TR, Khandelwal RA, Olivier BG, Teusink B, Bruggeman FJ. Maarleveld TR, et al. Biotechnol J. 2013 Sep;8(9):997-1008. doi: 10.1002/biot.201200291. Epub 2013 Jul 29. Biotechnol J. 2013. PMID: 23893965 Free PMC article. Review.
A data integration and visualization resource for the metabolic network of Synechocystis sp. PCC 6803.
Maarleveld TR, Boele J, Bruggeman FJ, Teusink B. Maarleveld TR, et al. Plant Physiol. 2014 Mar;164(3):1111-21. doi: 10.1104/pp.113.224394. Epub 2014 Jan 8. Plant Physiol. 2014. PMID: 24402049 Free PMC article.