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In silico design of antimicrobial peptides.
Maccari G, Di Luca M, Nifosì R. Maccari G, et al. Methods Mol Biol. 2015;1268:195-219. doi: 10.1007/978-1-4939-2285-7_9. Methods Mol Biol. 2015. PMID: 25555726
SecStAnT: secondary structure analysis tool for data selection, statistics and models building.
Maccari G, Spampinato GL, Tozzini V. Maccari G, et al. Bioinformatics. 2014 Mar 1;30(5):668-74. doi: 10.1093/bioinformatics/btt586. Epub 2013 Oct 15. Bioinformatics. 2014. PMID: 24130306
BaAMPs: the database of biofilm-active antimicrobial peptides.
Di Luca M, Maccari G, Maisetta G, Batoni G. Di Luca M, et al. Among authors: maccari g. Biofouling. 2015;31(2):193-9. doi: 10.1080/08927014.2015.1021340. Biofouling. 2015. PMID: 25760404
Antimicrobial peptides design by evolutionary multiobjective optimization.
Maccari G, Di Luca M, Nifosí R, Cardarelli F, Signore G, Boccardi C, Bifone A. Maccari G, et al. PLoS Comput Biol. 2013;9(9):e1003212. doi: 10.1371/journal.pcbi.1003212. Epub 2013 Sep 5. PLoS Comput Biol. 2013. PMID: 24039565 Free PMC article.
Treatment of microbial biofilms in the post-antibiotic era: prophylactic and therapeutic use of antimicrobial peptides and their design by bioinformatics tools.
Di Luca M, Maccari G, Nifosì R. Di Luca M, et al. Among authors: maccari g. Pathog Dis. 2014 Apr;70(3):257-70. doi: 10.1111/2049-632X.12151. Epub 2014 Mar 7. Pathog Dis. 2014. PMID: 24515391 Review.
Analogs of the Frog-skin Antimicrobial Peptide Temporin 1Tb Exhibit a Wider Spectrum of Activity and a Stronger Antibiofilm Potential as Compared to the Parental Peptide.
Grassi L, Maisetta G, Maccari G, Esin S, Batoni G. Grassi L, et al. Among authors: maccari g. Front Chem. 2017 Apr 11;5:24. doi: 10.3389/fchem.2017.00024. eCollection 2017. Front Chem. 2017. PMID: 28443279 Free PMC article.
Optimization of Analytical Potentials for Coarse-Grained Biopolymer Models.
Mereghetti P, Maccari G, Spampinato GL, Tozzini V. Mereghetti P, et al. Among authors: maccari g. J Phys Chem B. 2016 Aug 25;120(33):8571-9. doi: 10.1021/acs.jpcb.6b02555. Epub 2016 May 18. J Phys Chem B. 2016. PMID: 27150459
Rational Design of a Transferrin-Binding Peptide Sequence Tailored to Targeted Nanoparticle Internalization.
Santi M, Maccari G, Mereghetti P, Voliani V, Rocchiccioli S, Ucciferri N, Luin S, Signore G. Santi M, et al. Among authors: maccari g. Bioconjug Chem. 2017 Feb 15;28(2):471-480. doi: 10.1021/acs.bioconjchem.6b00611. Epub 2016 Dec 15. Bioconjug Chem. 2017. PMID: 27977155
Minimalist Model for the Dynamics of Helical Polypeptides: A Statistic-Based Parametrization.
Spampinato GL, Maccari G, Tozzini V. Spampinato GL, et al. Among authors: maccari g. J Chem Theory Comput. 2014 Sep 9;10(9):3885-95. doi: 10.1021/ct5004059. Epub 2014 Jul 31. J Chem Theory Comput. 2014. PMID: 26588532
COMPASSS (COMplex PAttern of Sequence Search Software), a simple and effective tool for mining complex motifs in whole genomes.
Maccari G, Gemignani F, Landi S. Maccari G, et al. Bioinformatics. 2010 Jul 15;26(14):1777-8. doi: 10.1093/bioinformatics/btq258. Epub 2010 May 25. Bioinformatics. 2010. PMID: 20501554
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