Madar A - Search Results

1

DREAM3: network inference using dynamic context likelihood of relatedness and the inferelator.

Madar A, Greenfield A, Vanden-Eijnden E, Bonneau R. Madar A, et al. PLoS One. 2010 Mar 22;5(3):e9803. doi: 10.1371/journal.pone.0009803. PLoS One. 2010. PMID: 20339551 Free PMC article.

2

Learning global models of transcriptional regulatory networks from data.

Madar A, Bonneau R. Madar A, et al. Methods Mol Biol. 2009;541:181. doi: 10.1007/978-1-59745-243-4_9. Methods Mol Biol. 2009. PMID: 19381524 Review.

3

The Inferelator 2.0: a scalable framework for reconstruction of dynamic regulatory network models.

Madar A, Greenfield A, Ostrer H, Vanden-Eijnden E, Bonneau R. Madar A, et al. Annu Int Conf IEEE Eng Med Biol Soc. 2009;2009:5448-51. doi: 10.1109/IEMBS.2009.5334018. Annu Int Conf IEEE Eng Med Biol Soc. 2009. PMID: 19964678

4

DREAM4: Combining genetic and dynamic information to identify biological networks and dynamical models.

Greenfield A, Madar A, Ostrer H, Bonneau R. Greenfield A, et al. Among authors: madar a. PLoS One. 2010 Oct 25;5(10):e13397. doi: 10.1371/journal.pone.0013397. PLoS One. 2010. PMID: 21049040 Free PMC article.

5

A predictive model for transcriptional control of physiology in a free living cell.

Bonneau R, Facciotti MT, Reiss DJ, Schmid AK, Pan M, Kaur A, Thorsson V, Shannon P, Johnson MH, Bare JC, Longabaugh W, Vuthoori M, Whitehead K, Madar A, Suzuki L, Mori T, Chang DE, Diruggiero J, Johnson CH, Hood L, Baliga NS. Bonneau R, et al. Among authors: madar a. Cell. 2007 Dec 28;131(7):1354-65. doi: 10.1016/j.cell.2007.10.053. Cell. 2007. PMID: 18160043 Free article.

6

Wisdom of crowds for robust gene network inference.

Marbach D, Costello JC, Küffner R, Vega NM, Prill RJ, Camacho DM, Allison KR; DREAM5 Consortium; Kellis M, Collins JJ, Stolovitzky G. Marbach D, et al. Nat Methods. 2012 Jul 15;9(8):796-804. doi: 10.1038/nmeth.2016. Nat Methods. 2012. PMID: 22796662 Free PMC article.

7

A validated regulatory network for Th17 cell specification.

Ciofani M, Madar A, Galan C, Sellars M, Mace K, Pauli F, Agarwal A, Huang W, Parkhurst CN, Muratet M, Newberry KM, Meadows S, Greenfield A, Yang Y, Jain P, Kirigin FK, Birchmeier C, Wagner EF, Murphy KM, Myers RM, Bonneau R, Littman DR. Ciofani M, et al. Among authors: madar a. Cell. 2012 Oct 12;151(2):289-303. doi: 10.1016/j.cell.2012.09.016. Epub 2012 Sep 25. Cell. 2012. PMID: 23021777 Free PMC article.

8

Leveraging chromatin accessibility for transcriptional regulatory network inference in T Helper 17 Cells.

Miraldi ER, Pokrovskii M, Watters A, Castro DM, De Veaux N, Hall JA, Lee JY, Ciofani M, Madar A, Carriero N, Littman DR, Bonneau R. Miraldi ER, et al. Among authors: madar a. Genome Res. 2019 Mar;29(3):449-463. doi: 10.1101/gr.238253.118. Epub 2019 Jan 29. Genome Res. 2019. PMID: 30696696 Free PMC article.

9

Genotet: An Interactive Web-based Visual Exploration Framework to Support Validation of Gene Regulatory Networks.

Yu B, Doraiswamy H, Chen X, Miraldi E, Arrieta-Ortiz ML, Hafemeister C, Madar A, Bonneau R, Silva CT. Yu B, et al. Among authors: madar a. IEEE Trans Vis Comput Graph. 2014 Dec;20(12):1903-12. doi: 10.1109/TVCG.2014.2346753. IEEE Trans Vis Comput Graph. 2014. PMID: 26356904

10

ICOS-based chimeric antigen receptors program bipolar TH17/TH1 cells.

Guedan S, Chen X, Madar A, Carpenito C, McGettigan SE, Frigault MJ, Lee J, Posey AD Jr, Scholler J, Scholler N, Bonneau R, June CH. Guedan S, et al. Among authors: madar a. Blood. 2014 Aug 14;124(7):1070-80. doi: 10.1182/blood-2013-10-535245. Epub 2014 Jul 1. Blood. 2014. PMID: 24986688 Free PMC article.

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