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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. Altschul SF, et al. Nucleic Acids Res. 1997 Sep 1;25(17):3389-402. doi: 10.1093/nar/25.17.3389. Nucleic Acids Res. 1997. PMID: 9254694 Free PMC article. Review.
Applications of network BLAST server.
Madden TL, Tatusov RL, Zhang J. Madden TL, et al. Methods Enzymol. 1996;266:131-41. doi: 10.1016/s0076-6879(96)66011-x. Methods Enzymol. 1996. PMID: 8743682
Protein sequence similarity searches using patterns as seeds.
Zhang Z, Schäffer AA, Miller W, Madden TL, Lipman DJ, Koonin EV, Altschul SF. Zhang Z, et al. Nucleic Acids Res. 1998 Sep 1;26(17):3986-90. doi: 10.1093/nar/26.17.3986. Nucleic Acids Res. 1998. PMID: 9705509 Free PMC article.
BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences.
Tatusova TA, Madden TL. Tatusova TA, et al. FEMS Microbiol Lett. 1999 May 15;174(2):247-50. doi: 10.1111/j.1574-6968.1999.tb13575.x. FEMS Microbiol Lett. 1999. PMID: 10339815
Database resources of the National Center for Biotechnology Information.
Wheeler DL, Chappey C, Lash AE, Leipe DD, Madden TL, Schuler GD, Tatusova TA, Rapp BA. Wheeler DL, et al. Nucleic Acids Res. 2000 Jan 1;28(1):10-4. doi: 10.1093/nar/28.1.10. Nucleic Acids Res. 2000. PMID: 10592169 Free PMC article.
Database resources of the National Center for Biotechnology Information.
Wheeler DL, Church DM, Lash AE, Leipe DD, Madden TL, Pontius JU, Schuler GD, Schriml LM, Tatusova TA, Wagner L, Rapp BA. Wheeler DL, et al. Nucleic Acids Res. 2001 Jan 1;29(1):11-6. doi: 10.1093/nar/29.1.11. Nucleic Acids Res. 2001. PMID: 11125038 Free PMC article.
Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements.
Schäffer AA, Aravind L, Madden TL, Shavirin S, Spouge JL, Wolf YI, Koonin EV, Altschul SF. Schäffer AA, et al. Nucleic Acids Res. 2001 Jul 15;29(14):2994-3005. doi: 10.1093/nar/29.14.2994. Nucleic Acids Res. 2001. PMID: 11452024 Free PMC article. Review.
Database resources of the National Center for Biotechnology Information: 2002 update.
Wheeler DL, Church DM, Lash AE, Leipe DD, Madden TL, Pontius JU, Schuler GD, Schriml LM, Tatusova TA, Wagner L, Rapp BA. Wheeler DL, et al. Nucleic Acids Res. 2002 Jan 1;30(1):13-6. doi: 10.1093/nar/30.1.13. Nucleic Acids Res. 2002. PMID: 11752242 Free PMC article.
Database resources of the National Center for Biotechnology.
Wheeler DL, Church DM, Federhen S, Lash AE, Madden TL, Pontius JU, Schuler GD, Schriml LM, Sequeira E, Tatusova TA, Wagner L. Wheeler DL, et al. Nucleic Acids Res. 2003 Jan 1;31(1):28-33. doi: 10.1093/nar/gkg033. Nucleic Acids Res. 2003. PMID: 12519941 Free PMC article.
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