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Performance and enhancement of the LZerD protein assembly pipeline in CAPRI 38-46.
Christoffer C, Terashi G, Shin WH, Aderinwale T, Maddhuri Venkata Subramaniya SR, Peterson L, Verburgt J, Kihara D. Christoffer C, et al. Among authors: maddhuri venkata subramaniya sr. Proteins. 2020 Aug;88(8):948-961. doi: 10.1002/prot.25850. Epub 2019 Nov 25. Proteins. 2020. PMID: 31697428 Free PMC article.
Residue-wise local quality estimation for protein models from cryo-EM maps.
Terashi G, Wang X, Maddhuri Venkata Subramaniya SR, Tesmer JJG, Kihara D. Terashi G, et al. Among authors: maddhuri venkata subramaniya sr. Nat Methods. 2022 Sep;19(9):1116-1125. doi: 10.1038/s41592-022-01574-4. Epub 2022 Aug 11. Nat Methods. 2022. PMID: 35953671 Free PMC article.
Outcomes of the EMDataResource Cryo-EM Ligand Modeling Challenge.
Lawson CL, Kryshtafovych A, Pintilie GD, Burley SK, Černý J, Chen VB, Emsley P, Gobbi A, Joachimiak A, Noreng S, Prisant M, Read RJ, Richardson JS, Rohou AL, Schneider B, Sellers BD, Shao C, Sourial E, Williams CI, Williams CJ, Yang Y, Abbaraju V, Afonine PV, Baker ML, Bond PS, Blundell TL, Burnley T, Campbell A, Cao R, Cheng J, Chojnowski G, Cowtan KD, DiMaio F, Esmaeeli R, Giri N, Grubmüller H, Hoh SW, Hou J, Hryc CF, Hunte C, Igaev M, Joseph AP, Kao WC, Kihara D, Kumar D, Lang L, Lin S, Maddhuri Venkata Subramaniya SR, Mittal S, Mondal A, Moriarty NW, Muenks A, Murshudov GN, Nicholls RA, Olek M, Palmer CM, Perez A, Pohjolainen E, Pothula KR, Rowley CN, Sarkar D, Schäfer LU, Schlicksup CJ, Schröder GF, Shekhar M, Si D, Singharoy A, Sobolev OV, Terashi G, Vaiana AC, Vedithi SC, Verburgt J, Wang X, Warshamanage R, Winn MD, Weyand S, Yamashita K, Zhao M, Schmid MF, Berman HM, Chiu W. Lawson CL, et al. Among authors: maddhuri venkata subramaniya sr. Res Sq [Preprint]. 2024 Jan 25:rs.3.rs-3864137. doi: 10.21203/rs.3.rs-3864137/v1. Res Sq. 2024. PMID: 38343795 Free PMC article. Preprint.