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14-3-3-Pred: improved methods to predict 14-3-3-binding phosphopeptides.
Madeira F, Tinti M, Murugesan G, Berrett E, Stafford M, Toth R, Cole C, MacKintosh C, Barton GJ. Madeira F, et al. Bioinformatics. 2015 Jul 15;31(14):2276-83. doi: 10.1093/bioinformatics/btv133. Epub 2015 Mar 3. Bioinformatics. 2015. PMID: 25735772 Free PMC article.
ANIA: ANnotation and Integrated Analysis of the 14-3-3 interactome.
Tinti M, Madeira F, Murugesan G, Hoxhaj G, Toth R, Mackintosh C. Tinti M, et al. Among authors: madeira f. Database (Oxford). 2014 Feb 5;2014:bat085. doi: 10.1093/database/bat085. Print 2014. Database (Oxford). 2014. PMID: 24501395 Free PMC article.
The Dundee Resource for Sequence Analysis and Structure Prediction.
MacGowan SA, Madeira F, Britto-Borges T, Warowny M, Drozdetskiy A, Procter JB, Barton GJ. MacGowan SA, et al. Among authors: madeira f. Protein Sci. 2020 Jan;29(1):277-297. doi: 10.1002/pro.3783. Epub 2019 Nov 28. Protein Sci. 2020. PMID: 31710725 Free PMC article.
Annotation of biologically relevant ligands in UniProtKB using ChEBI.
Coudert E, Gehant S, de Castro E, Pozzato M, Baratin D, Neto T, Sigrist CJA, Redaschi N, Bridge A; UniProt Consortium. Coudert E, et al. Bioinformatics. 2023 Jan 1;39(1):btac793. doi: 10.1093/bioinformatics/btac793. Bioinformatics. 2023. PMID: 36484697 Free PMC article.
Recommendations for the packaging and containerizing of bioinformatics software.
Gruening B, Sallou O, Moreno P, da Veiga Leprevost F, Ménager H, Søndergaard D, Röst H, Sachsenberg T, O'Connor B, Madeira F, Dominguez Del Angel V, Crusoe MR, Varma S, Blankenberg D, Jimenez RC; BioContainers Community; Perez-Riverol Y. Gruening B, et al. Among authors: madeira f. F1000Res. 2018 Jun 14;7:ISCB Comm J-742. doi: 10.12688/f1000research.15140.2. eCollection 2018. F1000Res. 2018. PMID: 31543945 Free PMC article.
129 results