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A draft map of the human proteome.
Kim MS, Pinto SM, Getnet D, Nirujogi RS, Manda SS, Chaerkady R, Madugundu AK, Kelkar DS, Isserlin R, Jain S, Thomas JK, Muthusamy B, Leal-Rojas P, Kumar P, Sahasrabuddhe NA, Balakrishnan L, Advani J, George B, Renuse S, Selvan LD, Patil AH, Nanjappa V, Radhakrishnan A, Prasad S, Subbannayya T, Raju R, Kumar M, Sreenivasamurthy SK, Marimuthu A, Sathe GJ, Chavan S, Datta KK, Subbannayya Y, Sahu A, Yelamanchi SD, Jayaram S, Rajagopalan P, Sharma J, Murthy KR, Syed N, Goel R, Khan AA, Ahmad S, Dey G, Mudgal K, Chatterjee A, Huang TC, Zhong J, Wu X, Shaw PG, Freed D, Zahari MS, Mukherjee KK, Shankar S, Mahadevan A, Lam H, Mitchell CJ, Shankar SK, Satishchandra P, Schroeder JT, Sirdeshmukh R, Maitra A, Leach SD, Drake CG, Halushka MK, Prasad TS, Hruban RH, Kerr CL, Bader GD, Iacobuzio-Donahue CA, Gowda H, Pandey A. Kim MS, et al. Nature. 2014 May 29;509(7502):575-81. doi: 10.1038/nature13302. Nature. 2014. PMID: 24870542 Free PMC article.
Characterizing the normal proteome of human ciliary body.
Goel R, Murthy KR, Srikanth SM, Pinto SM, Bhattacharjee M, Kelkar DS, Madugundu AK, Dey G, Mohan SS, Krishna V, Prasad TK, Chakravarti S, Harsha HC, Pandey A. Goel R, et al. Clin Proteomics. 2013 Aug 1;10(1):9. doi: 10.1186/1559-0275-10-9. Clin Proteomics. 2013. PMID: 23914977 Free PMC article.
Proteogenomic analysis of pathogenic yeast Cryptococcus neoformans using high resolution mass spectrometry.
Nagarajha Selvan LD, Kaviyil JE, Nirujogi RS, Muthusamy B, Puttamallesh VN, Subbannayya T, Syed N, Radhakrishnan A, Kelkar DS, Ahmad S, Pinto SM, Kumar P, Madugundu AK, Nair B, Chatterjee A, Pandey A, Ravikumar R, Gowda H, Prasad TS. Nagarajha Selvan LD, et al. Clin Proteomics. 2014 Feb 3;11(1):5. doi: 10.1186/1559-0275-11-5. Clin Proteomics. 2014. PMID: 24484775 Free PMC article.
Annotation of the zebrafish genome through an integrated transcriptomic and proteomic analysis.
Kelkar DS, Provost E, Chaerkady R, Muthusamy B, Manda SS, Subbannayya T, Selvan LD, Wang CH, Datta KK, Woo S, Dwivedi SB, Renuse S, Getnet D, Huang TC, Kim MS, Pinto SM, Mitchell CJ, Madugundu AK, Kumar P, Sharma J, Advani J, Dey G, Balakrishnan L, Syed N, Nanjappa V, Subbannayya Y, Goel R, Prasad TS, Bafna V, Sirdeshmukh R, Gowda H, Wang C, Leach SD, Pandey A. Kelkar DS, et al. Mol Cell Proteomics. 2014 Nov;13(11):3184-98. doi: 10.1074/mcp.M114.038299. Epub 2014 Jul 24. Mol Cell Proteomics. 2014. PMID: 25060758 Free PMC article.
Host response profile of human brain proteome in toxoplasma encephalitis co-infected with HIV.
Sahu A, Kumar S, Sreenivasamurthy SK, Selvan LD, Madugundu AK, Yelamanchi SD, Puttamallesh VN, Dey G, Anil AK, Srinivasan A, Mukherjee KK, Gowda H, Satishchandra P, Mahadevan A, Pandey A, Prasad TS, Shankar SK. Sahu A, et al. Clin Proteomics. 2014 Nov 1;11(1):39. doi: 10.1186/1559-0275-11-39. eCollection 2014. Clin Proteomics. 2014. PMID: 25404878 Free PMC article.
Comprehensive proteomics analysis of glycosomes from Leishmania donovani.
Jamdhade MD, Pawar H, Chavan S, Sathe G, Umasankar PK, Mahale KN, Dixit T, Madugundu AK, Prasad TS, Gowda H, Pandey A, Patole MS. Jamdhade MD, et al. OMICS. 2015 Mar;19(3):157-70. doi: 10.1089/omi.2014.0163. OMICS. 2015. PMID: 25748437 Free PMC article.
PGTools: A Software Suite for Proteogenomic Data Analysis and Visualization.
Nagaraj SH, Waddell N, Madugundu AK, Wood S, Jones A, Mandyam RA, Nones K, Pearson JV, Grimmond SM. Nagaraj SH, et al. J Proteome Res. 2015 May 1;14(5):2255-66. doi: 10.1021/acs.jproteome.5b00029. Epub 2015 Apr 17. J Proteome Res. 2015. PMID: 25760677
Characterization of host response to Cryptococcus neoformans through quantitative proteomic analysis of cryptococcal meningitis co-infected with HIV.
Selvan LD, Sreenivasamurthy SK, Kumar S, Yelamanchi SD, Madugundu AK, Anil AK, Renuse S, Nair BG, Gowda H, Mathur PP, Satishchandra P, Shankar SK, Mahadevan A, Keshava Prasad TS. Selvan LD, et al. Mol Biosyst. 2015 Sep;11(9):2529-40. doi: 10.1039/c5mb00187k. Mol Biosyst. 2015. PMID: 26181685
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