Mahurkar AA - Search Results

1

RNA-Seq analysis of isolate- and growth phase-specific differences in the global transcriptomes of enteropathogenic Escherichia coli prototype isolates.

Hazen TH, Daugherty SC, Shetty A, Mahurkar AA, White O, Kaper JB, Rasko DA. Hazen TH, et al. Among authors: mahurkar aa. Front Microbiol. 2015 Jun 12;6:569. doi: 10.3389/fmicb.2015.00569. eCollection 2015. Front Microbiol. 2015. PMID: 26124752 Free PMC article.

2

GeMInA, Genomic Metadata for Infectious Agents, a geospatial surveillance pathogen database.

Schriml LM, Arze C, Nadendla S, Ganapathy A, Felix V, Mahurkar A, Phillippy K, Gussman A, Angiuoli S, Ghedin E, White O, Hall N. Schriml LM, et al. Nucleic Acids Res. 2010 Jan;38(Database issue):D754-64. doi: 10.1093/nar/gkp832. Epub 2009 Oct 22. Nucleic Acids Res. 2010. PMID: 19850722 Free PMC article.

3

Ergatis: a web interface and scalable software system for bioinformatics workflows.

Orvis J, Crabtree J, Galens K, Gussman A, Inman JM, Lee E, Nampally S, Riley D, Sundaram JP, Felix V, Whitty B, Mahurkar A, Wortman J, White O, Angiuoli SV. Orvis J, et al. Bioinformatics. 2010 Jun 15;26(12):1488-92. doi: 10.1093/bioinformatics/btq167. Epub 2010 Apr 22. Bioinformatics. 2010. PMID: 20413634 Free PMC article.

4

The IGS Standard Operating Procedure for Automated Prokaryotic Annotation.

Galens K, Orvis J, Daugherty S, Creasy HH, Angiuoli S, White O, Wortman J, Mahurkar A, Giglio MG. Galens K, et al. Stand Genomic Sci. 2011 Apr 29;4(2):244-51. doi: 10.4056/sigs.1223234. Epub 2011 Apr 25. Stand Genomic Sci. 2011. PMID: 21677861 Free PMC article.

5

MetaRef: a pan-genomic database for comparative and community microbial genomics.

Huang K, Brady A, Mahurkar A, White O, Gevers D, Huttenhower C, Segata N. Huang K, et al. Nucleic Acids Res. 2014 Jan;42(Database issue):D617-24. doi: 10.1093/nar/gkt1078. Epub 2013 Nov 6. Nucleic Acids Res. 2014. PMID: 24203705 Free PMC article.

6

Simultaneous transcriptional profiling of bacteria and their host cells.

Humphrys MS, Creasy T, Sun Y, Shetty AC, Chibucos MC, Drabek EF, Fraser CM, Farooq U, Sengamalay N, Ott S, Shou H, Bavoil PM, Mahurkar A, Myers GS. Humphrys MS, et al. PLoS One. 2013 Dec 4;8(12):e80597. doi: 10.1371/journal.pone.0080597. eCollection 2013. PLoS One. 2013. PMID: 24324615 Free PMC article.

7

Circleator: flexible circular visualization of genome-associated data with BioPerl and SVG.

Crabtree J, Agrawal S, Mahurkar A, Myers GS, Rasko DA, White O. Crabtree J, et al. Bioinformatics. 2014 Nov 1;30(21):3125-7. doi: 10.1093/bioinformatics/btu505. Epub 2014 Jul 29. Bioinformatics. 2014. PMID: 25075113 Free PMC article.

8

Advancing the microbiome research community.

Huttenhower C, Knight R, Brown CT, Caporaso JG, Clemente JC, Gevers D, Franzosa EA, Kelley ST, Knights D, Ley RE, Mahurkar A, Ravel J; Scientists for Advancement of Microbiome Research; White O. Huttenhower C, et al. Cell. 2014 Oct 9;159(2):227-30. doi: 10.1016/j.cell.2014.09.022. Cell. 2014. PMID: 25303518 Free PMC article.

9

MNKs act as a regulatory switch for eIF4E1 and eIF4E3 driven mRNA translation in DLBCL.

Landon AL, Muniandy PA, Shetty AC, Lehrmann E, Volpon L, Houng S, Zhang Y, Dai B, Peroutka R, Mazan-Mamczarz K, Steinhardt J, Mahurkar A, Becker KG, Borden KL, Gartenhaus RB. Landon AL, et al. Nat Commun. 2014 Nov 18;5:5413. doi: 10.1038/ncomms6413. Nat Commun. 2014. PMID: 25403230 Free PMC article.

10

Map of open and closed chromatin domains in Drosophila genome.

Milon B, Sun Y, Chang W, Creasy T, Mahurkar A, Shetty A, Nurminsky D, Nurminskaya M. Milon B, et al. BMC Genomics. 2014 Nov 18;15(1):988. doi: 10.1186/1471-2164-15-988. BMC Genomics. 2014. PMID: 25407537 Free PMC article.

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