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CANTATAdb: A Collection of Plant Long Non-Coding RNAs.

Szcześniak MW, Rosikiewicz W, Makałowska I. Szcześniak MW, et al. Among authors: makalowska i. Plant Cell Physiol. 2016 Jan;57(1):e8. doi: 10.1093/pcp/pcv201. Epub 2015 Dec 12. Plant Cell Physiol. 2016. PMID: 26657895 Free PMC article.

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CANTATAdb 2.0: Expanding the Collection of Plant Long Noncoding RNAs.

Szcześniak MW, Bryzghalov O, Ciomborowska-Basheer J, Makałowska I. Szcześniak MW, et al. Among authors: makalowska i. Methods Mol Biol. 2019;1933:415-429. doi: 10.1007/978-1-4939-9045-0_26. Methods Mol Biol. 2019. PMID: 30945201

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Inter-population Differences in Retrogene Loss and Expression in Humans.

Kabza M, Kubiak MR, Danek A, Rosikiewicz W, Deorowicz S, Polański A, Makałowska I. Kabza M, et al. Among authors: makalowska i. PLoS Genet. 2015 Oct 16;11(10):e1005579. doi: 10.1371/journal.pgen.1005579. eCollection 2015 Oct. PLoS Genet. 2015. PMID: 26474060 Free PMC article.

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ERISdb: a database of plant splice sites and splicing signals.

Szcześniak MW, Kabza M, Pokrzywa R, Gudyś A, Makałowska I. Szcześniak MW, et al. Among authors: makalowska i. Plant Cell Physiol. 2013 Feb;54(2):e10. doi: 10.1093/pcp/pct001. Epub 2013 Jan 7. Plant Cell Physiol. 2013. PMID: 23299413

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HuntMi: an efficient and taxon-specific approach in pre-miRNA identification.

Gudyś A, Szcześniak MW, Sikora M, Makałowska I. Gudyś A, et al. Among authors: makalowska i. BMC Bioinformatics. 2013 Mar 5;14:83. doi: 10.1186/1471-2105-14-83. BMC Bioinformatics. 2013. PMID: 23497112 Free PMC article.

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RetrogeneDB--a database of animal retrogenes.

Kabza M, Ciomborowska J, Makałowska I. Kabza M, et al. Among authors: makalowska i. Mol Biol Evol. 2014 Jul;31(7):1646-8. doi: 10.1093/molbev/msu139. Epub 2014 Apr 16. Mol Biol Evol. 2014. PMID: 24739306 Free PMC article.

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[MicroRNA databases].

Szcześniak MW, Owczarkowska E, Gapski J, Makałowska I. Szcześniak MW, et al. Among authors: makalowska i. Postepy Biochem. 2012;58(1):91-9. Postepy Biochem. 2012. PMID: 23214133 Review. Polish.

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OverGeneDB: a database of 5' end protein coding overlapping genes in human and mouse genomes.

Rosikiewicz W, Suzuki Y, Makalowska I. Rosikiewicz W, et al. Among authors: makalowska i. Nucleic Acids Res. 2018 Jan 4;46(D1):D186-D193. doi: 10.1093/nar/gkx948. Nucleic Acids Res. 2018. PMID: 29069459 Free PMC article.

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lncRNA-RNA Interactions across the Human Transcriptome.

Szcześniak MW, Makałowska I. Szcześniak MW, et al. Among authors: makalowska i. PLoS One. 2016 Mar 1;11(3):e0150353. doi: 10.1371/journal.pone.0150353. eCollection 2016. PLoS One. 2016. PMID: 26930590 Free PMC article.

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miRNEST 2.0: a database of plant and animal microRNAs.

Szczesniak MW, Makalowska I. Szczesniak MW, et al. Among authors: makalowska i. Nucleic Acids Res. 2014 Jan;42(Database issue):D74-7. doi: 10.1093/nar/gkt1156. Epub 2013 Nov 15. Nucleic Acids Res. 2014. PMID: 24243848 Free PMC article.

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