Makeev V - Search Results

1

A mitochondria-specific mutational signature of aging: increased rate of A > G substitutions on the heavy strand.

Mikhailova AG, Mikhailova AA, Ushakova K, Tretiakov EO, Iliushchenko D, Shamansky V, Lobanova V, Kozenkov I, Efimenko B, Yurchenko AA, Kozenkova E, Zdobnov EM, Makeev V, Yurov V, Tanaka M, Gostimskaya I, Fleischmann Z, Annis S, Franco M, Wasko K, Denisov S, Kunz WS, Knorre D, Mazunin I, Nikolaev S, Fellay J, Reymond A, Khrapko K, Gunbin K, Popadin K. Mikhailova AG, et al. Among authors: makeev v. Nucleic Acids Res. 2022 Oct 14;50(18):10264-10277. doi: 10.1093/nar/gkac779. Nucleic Acids Res. 2022. PMID: 36130228 Free PMC article.

2

Discovery of molecular markers to discriminate corneal endothelial cells in the human body.

Yoshihara M, Ohmiya H, Hara S, Kawasaki S; FANTOM consortium; Hayashizaki Y, Itoh M, Kawaji H, Tsujikawa M, Nishida K. Yoshihara M, et al. PLoS One. 2015 Mar 25;10(3):e0117581. doi: 10.1371/journal.pone.0117581. eCollection 2015. PLoS One. 2015. PMID: 25807145 Free PMC article.

3

Application of Gene Expression Trajectories Initiated from ErbB Receptor Activation Highlights the Dynamics of Divergent Promoter Usage.

Carbajo D, Magi S, Itoh M, Kawaji H, Lassmann T, Arner E, Forrest AR, Carninci P, Hayashizaki Y, Daub CO; FANTOM consortium; Okada-Hatakeyama M, Mar JC. Carbajo D, et al. PLoS One. 2015 Dec 14;10(12):e0144176. doi: 10.1371/journal.pone.0144176. eCollection 2015. PLoS One. 2015. PMID: 26658111 Free PMC article.

4

The statistical geometry of transcriptome divergence in cell-type evolution and cancer.

Liang C; FANTOM Consortium; Forrest AR, Wagner GP. Liang C, et al. Nat Commun. 2015 Jan 14;6:6066. doi: 10.1038/ncomms7066. Nat Commun. 2015. PMID: 25585899 Free article.

5

Distance preferences in the arrangement of binding motifs and hierarchical levels in organization of transcription regulatory information.

Makeev VJ, Lifanov AP, Nazina AG, Papatsenko DA. Makeev VJ, et al. Nucleic Acids Res. 2003 Oct 15;31(20):6016-26. doi: 10.1093/nar/gkg799. Nucleic Acids Res. 2003. PMID: 14530449 Free PMC article.

6

Heteroplasmic Variants of Mitochondrial DNA in Atherosclerotic Lesions of Human Aortic Intima.

Sobenin IA, Zhelankin AV, Khasanova ZB, Sinyov VV, Medvedeva LV, Sagaidak MO, Makeev VJ, Kolmychkova KI, Smirnova AS, Sukhorukov VN, Postnov AY, Grechko AV, Orekhov AN. Sobenin IA, et al. Among authors: makeev vj. Biomolecules. 2019 Sep 6;9(9):455. doi: 10.3390/biom9090455. Biomolecules. 2019. PMID: 31500189 Free PMC article.

7

ANANASTRA: annotation and enrichment analysis of allele-specific transcription factor binding at SNPs.

Boytsov A, Abramov S, Aiusheeva AZ, Kasianova AM, Baulin E, Kuznetsov IA, Aulchenko YS, Kolmykov S, Yevshin I, Kolpakov F, Vorontsov IE, Makeev VJ, Kulakovskiy IV. Boytsov A, et al. Among authors: makeev vj. Nucleic Acids Res. 2022 Jul 5;50(W1):W51-W56. doi: 10.1093/nar/gkac262. Nucleic Acids Res. 2022. PMID: 35446421 Free PMC article.

8

HOCOMOCO in 2024: a rebuild of the curated collection of binding models for human and mouse transcription factors.

Vorontsov IE, Eliseeva IA, Zinkevich A, Nikonov M, Abramov S, Boytsov A, Kamenets V, Kasianova A, Kolmykov S, Yevshin IS, Favorov A, Medvedeva YA, Jolma A, Kolpakov F, Makeev VJ, Kulakovskiy IV. Vorontsov IE, et al. Among authors: makeev vj. Nucleic Acids Res. 2024 Jan 5;52(D1):D154-D163. doi: 10.1093/nar/gkad1077. Nucleic Acids Res. 2024. PMID: 37971293 Free PMC article.

9

CORECLUST: identification of the conserved CRM grammar together with prediction of gene regulation.

Nikulova AA, Favorov AV, Sutormin RA, Makeev VJ, Mironov AA. Nikulova AA, et al. Among authors: makeev vj. Nucleic Acids Res. 2012 Jul;40(12):e93. doi: 10.1093/nar/gks235. Epub 2012 Mar 15. Nucleic Acids Res. 2012. PMID: 22422836 Free PMC article.

10

HOCOMOCO: a comprehensive collection of human transcription factor binding sites models.

Kulakovskiy IV, Medvedeva YA, Schaefer U, Kasianov AS, Vorontsov IE, Bajic VB, Makeev VJ. Kulakovskiy IV, et al. Among authors: makeev vj. Nucleic Acids Res. 2013 Jan;41(Database issue):D195-202. doi: 10.1093/nar/gks1089. Epub 2012 Nov 21. Nucleic Acids Res. 2013. PMID: 23175603 Free PMC article.

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