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L-GRAAL: Lagrangian graphlet-based network aligner.
Malod-Dognin N, Pržulj N. Malod-Dognin N, et al. Bioinformatics. 2015 Jul 1;31(13):2182-9. doi: 10.1093/bioinformatics/btv130. Epub 2015 Feb 28. Bioinformatics. 2015. PMID: 25725498 Free PMC article.
Fuse: multiple network alignment via data fusion.
Gligorijević V, Malod-Dognin N, Pržulj N. Gligorijević V, et al. Bioinformatics. 2016 Apr 15;32(8):1195-203. doi: 10.1093/bioinformatics/btv731. Epub 2015 Dec 14. Bioinformatics. 2016. PMID: 26668003
A global genetic interaction network maps a wiring diagram of cellular function.
Costanzo M, VanderSluis B, Koch EN, Baryshnikova A, Pons C, Tan G, Wang W, Usaj M, Hanchard J, Lee SD, Pelechano V, Styles EB, Billmann M, van Leeuwen J, van Dyk N, Lin ZY, Kuzmin E, Nelson J, Piotrowski JS, Srikumar T, Bahr S, Chen Y, Deshpande R, Kurat CF, Li SC, Li Z, Usaj MM, Okada H, Pascoe N, San Luis BJ, Sharifpoor S, Shuteriqi E, Simpkins SW, Snider J, Suresh HG, Tan Y, Zhu H, Malod-Dognin N, Janjic V, Przulj N, Troyanskaya OG, Stagljar I, Xia T, Ohya Y, Gingras AC, Raught B, Boutros M, Steinmetz LM, Moore CL, Rosebrock AP, Caudy AA, Myers CL, Andrews B, Boone C. Costanzo M, et al. Science. 2016 Sep 23;353(6306):aaf1420. doi: 10.1126/science.aaf1420. Science. 2016. PMID: 27708008 Free PMC article.
Graphlet-based Characterization of Directed Networks.
Sarajlić A, Malod-Dognin N, Yaveroğlu ÖN, Pržulj N. Sarajlić A, et al. Sci Rep. 2016 Oct 13;6:35098. doi: 10.1038/srep35098. Sci Rep. 2016. PMID: 27734973 Free PMC article.
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