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The minimum information about a proteomics experiment (MIAPE).
Taylor CF, Paton NW, Lilley KS, Binz PA, Julian RK Jr, Jones AR, Zhu W, Apweiler R, Aebersold R, Deutsch EW, Dunn MJ, Heck AJ, Leitner A, Macht M, Mann M, Martens L, Neubert TA, Patterson SD, Ping P, Seymour SL, Souda P, Tsugita A, Vandekerckhove J, Vondriska TM, Whitelegge JP, Wilkins MR, Xenarios I, Yates JR 3rd, Hermjakob H. Taylor CF, et al. Nat Biotechnol. 2007 Aug;25(8):887-93. doi: 10.1038/nbt1329. Nat Biotechnol. 2007. PMID: 17687369 Review.
Higher-energy C-trap dissociation for peptide modification analysis.
Olsen JV, Macek B, Lange O, Makarov A, Horning S, Mann M. Olsen JV, et al. Nat Methods. 2007 Sep;4(9):709-12. doi: 10.1038/nmeth1060. Epub 2007 Aug 26. Nat Methods. 2007. PMID: 17721543
Precision proteomics: the case for high resolution and high mass accuracy.
Mann M, Kelleher NL. Mann M, et al. Proc Natl Acad Sci U S A. 2008 Nov 25;105(47):18132-8. doi: 10.1073/pnas.0800788105. Epub 2008 Sep 25. Proc Natl Acad Sci U S A. 2008. PMID: 18818311 Free PMC article.
MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification.
Cox J, Mann M. Cox J, et al. Nat Biotechnol. 2008 Dec;26(12):1367-72. doi: 10.1038/nbt.1511. Epub 2008 Nov 30. Nat Biotechnol. 2008. PMID: 19029910
Using correlation analysis and graph theory, MaxQuant detects peaks, isotope clusters and stable amino acid isotope-labeled (SILAC) peptide pairs as three-dimensional objects in m/z, elution time and signal intensity space. ...
Using correlation analysis and graph theory, MaxQuant detects peaks, isotope clusters and stable amino acid isotope-labeled (SILAC) peptide …
Large-scale proteomics analysis of the human kinome.
Oppermann FS, Gnad F, Olsen JV, Hornberger R, Greff Z, Kéri G, Mann M, Daub H. Oppermann FS, et al. Mol Cell Proteomics. 2009 Jul;8(7):1751-64. doi: 10.1074/mcp.M800588-MCP200. Epub 2009 Apr 15. Mol Cell Proteomics. 2009. PMID: 19369195 Free PMC article.
Universal sample preparation method for proteome analysis.
Wiśniewski JR, Zougman A, Nagaraj N, Mann M. Wiśniewski JR, et al. Nat Methods. 2009 May;6(5):359-62. doi: 10.1038/nmeth.1322. Epub 2009 Apr 19. Nat Methods. 2009. PMID: 19377485
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