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CD-Search: protein domain annotations on the fly.
Marchler-Bauer A, Bryant SH. Marchler-Bauer A, et al. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W327-31. doi: 10.1093/nar/gkh454. Nucleic Acids Res. 2004. PMID: 15215404 Free PMC article.
A measure of success in fold recognition.
Marchler-Bauer A, Bryant SH. Marchler-Bauer A, et al. Trends Biochem Sci. 1997 Jul;22(7):236-40. doi: 10.1016/s0968-0004(97)01078-5. Trends Biochem Sci. 1997. PMID: 9255062 Review.
Measures of threading specificity and accuracy.
Marchler-Bauer A, Bryant SH. Marchler-Bauer A, et al. Proteins. 1997;Suppl 1:74-82. doi: 10.1002/(sici)1097-0134(1997)1+<74::aid-prot11>3.3.co;2-3. Proteins. 1997. PMID: 9485498
A retrospective analysis of CASP2 threading predictions.
Marchler-Bauer A, Levitt M, Bryant SH. Marchler-Bauer A, et al. Proteins. 1997;Suppl 1:83-91. doi: 10.1002/(sici)1097-0134(1997)1+<83::aid-prot12>3.3.co;2-2. Proteins. 1997. PMID: 9485499
MMDB: Entrez's 3D structure database.
Marchler-Bauer A, Addess KJ, Chappey C, Geer L, Madej T, Matsuo Y, Wang Y, Bryant SH. Marchler-Bauer A, et al. Nucleic Acids Res. 1999 Jan 1;27(1):240-3. doi: 10.1093/nar/27.1.240. Nucleic Acids Res. 1999. PMID: 9847190 Free PMC article.
Threading with explicit models for evolutionary conservation of structure and sequence.
Panchenko A, Marchler-Bauer A, Bryant SH. Panchenko A, et al. Proteins. 1999;Suppl 3:133-40. doi: 10.1002/(sici)1097-0134(1999)37:3+<133::aid-prot18>3.3.co;2-4. Proteins. 1999. PMID: 10526362
A measure of progress in fold recognition?
Marchler-Bauer A, Bryant SH. Marchler-Bauer A, et al. Proteins. 1999;Suppl 3:218-25. doi: 10.1002/(sici)1097-0134(1999)37:3+<218::aid-prot28>3.3.co;2-o. Proteins. 1999. PMID: 10526372
MMDB: 3D structure data in Entrez.
Wang Y, Addess KJ, Geer L, Madej T, Marchler-Bauer A, Zimmerman D, Bryant SH. Wang Y, et al. Nucleic Acids Res. 2000 Jan 1;28(1):243-5. doi: 10.1093/nar/28.1.243. Nucleic Acids Res. 2000. PMID: 10592236 Free PMC article.
Domain size distributions can predict domain boundaries.
Wheelan SJ, Marchler-Bauer A, Bryant SH. Wheelan SJ, et al. Bioinformatics. 2000 Jul;16(7):613-8. doi: 10.1093/bioinformatics/16.7.613. Bioinformatics. 2000. PMID: 11038331
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