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88 results
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Structure learning in Nested Effects Models.
Tresch A, Markowetz F. Tresch A, et al. Among authors: markowetz f. Stat Appl Genet Mol Biol. 2008;7(1):Article9. doi: 10.2202/1544-6115.1332. Epub 2008 Mar 1. Stat Appl Genet Mol Biol. 2008. PMID: 18312214
Inferring modulators of genetic interactions with epistatic nested effects models.
Pirkl M, Diekmann M, van der Wees M, Beerenwinkel N, Fröhlich H, Markowetz F. Pirkl M, et al. Among authors: markowetz f. PLoS Comput Biol. 2017 Apr 13;13(4):e1005496. doi: 10.1371/journal.pcbi.1005496. eCollection 2017 Apr. PLoS Comput Biol. 2017. PMID: 28406896 Free PMC article.
Nested effects models for high-dimensional phenotyping screens.
Markowetz F, Kostka D, Troyanskaya OG, Spang R. Markowetz F, et al. Bioinformatics. 2007 Jul 1;23(13):i305-12. doi: 10.1093/bioinformatics/btm178. Bioinformatics. 2007. PMID: 17646311
Analyzing gene perturbation screens with nested effects models in R and bioconductor.
Fröhlich H, Beissbarth T, Tresch A, Kostka D, Jacob J, Spang R, Markowetz F. Fröhlich H, et al. Among authors: markowetz f. Bioinformatics. 2008 Nov 1;24(21):2549-50. doi: 10.1093/bioinformatics/btn446. Epub 2008 Aug 21. Bioinformatics. 2008. PMID: 18718939 Free PMC article.
Computational diagnostics with gene expression profiles.
Lottaz C, Kostka D, Markowetz F, Spang R. Lottaz C, et al. Among authors: markowetz f. Methods Mol Biol. 2008;453:281-96. doi: 10.1007/978-1-60327-429-6_15. Methods Mol Biol. 2008. PMID: 18712310
All biology is computational biology.
Markowetz F. Markowetz F. PLoS Biol. 2017 Mar 9;15(3):e2002050. doi: 10.1371/journal.pbio.2002050. eCollection 2017 Mar. PLoS Biol. 2017. PMID: 28278152 Free PMC article.
Posterior association networks and functional modules inferred from rich phenotypes of gene perturbations.
Wang X, Castro MA, Mulder KW, Markowetz F. Wang X, et al. Among authors: markowetz f. PLoS Comput Biol. 2012;8(6):e1002566. doi: 10.1371/journal.pcbi.1002566. Epub 2012 Jun 28. PLoS Comput Biol. 2012. PMID: 22761558 Free PMC article.
RedeR: R/Bioconductor package for representing modular structures, nested networks and multiple levels of hierarchical associations.
Castro MA, Wang X, Fletcher MN, Meyer KB, Markowetz F. Castro MA, et al. Among authors: markowetz f. Genome Biol. 2012 Apr 24;13(4):R29. doi: 10.1186/gb-2012-13-4-r29. Genome Biol. 2012. PMID: 22531049 Free PMC article.
Patient-specific data fusion defines prognostic cancer subtypes.
Yuan Y, Savage RS, Markowetz F. Yuan Y, et al. Among authors: markowetz f. PLoS Comput Biol. 2011 Oct;7(10):e1002227. doi: 10.1371/journal.pcbi.1002227. Epub 2011 Oct 20. PLoS Comput Biol. 2011. PMID: 22028636 Free PMC article.
HTSanalyzeR: an R/Bioconductor package for integrated network analysis of high-throughput screens.
Wang X, Terfve C, Rose JC, Markowetz F. Wang X, et al. Among authors: markowetz f. Bioinformatics. 2011 Mar 15;27(6):879-80. doi: 10.1093/bioinformatics/btr028. Epub 2011 Jan 22. Bioinformatics. 2011. PMID: 21258062 Free PMC article.
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