Markowetz F - Search Results

1

Analyzing gene perturbation screens with nested effects models in R and bioconductor.

Fröhlich H, Beissbarth T, Tresch A, Kostka D, Jacob J, Spang R, Markowetz F. Fröhlich H, et al. Among authors: markowetz f. Bioinformatics. 2008 Nov 1;24(21):2549-50. doi: 10.1093/bioinformatics/btn446. Epub 2008 Aug 21. Bioinformatics. 2008. PMID: 18718939 Free PMC article.

2

Structure learning in Nested Effects Models.

Tresch A, Markowetz F. Tresch A, et al. Among authors: markowetz f. Stat Appl Genet Mol Biol. 2008;7(1):Article9. doi: 10.2202/1544-6115.1332. Epub 2008 Mar 1. Stat Appl Genet Mol Biol. 2008. PMID: 18312214

3

Non-transcriptional pathway features reconstructed from secondary effects of RNA interference.

Markowetz F, Bloch J, Spang R. Markowetz F, et al. Bioinformatics. 2005 Nov 1;21(21):4026-32. doi: 10.1093/bioinformatics/bti662. Epub 2005 Sep 13. Bioinformatics. 2005. PMID: 16159925

4

Nested effects models for high-dimensional phenotyping screens.

Markowetz F, Kostka D, Troyanskaya OG, Spang R. Markowetz F, et al. Bioinformatics. 2007 Jul 1;23(13):i305-12. doi: 10.1093/bioinformatics/btm178. Bioinformatics. 2007. PMID: 17646311 Free article.

5

Inferring cellular networks--a review.

Markowetz F, Spang R. Markowetz F, et al. BMC Bioinformatics. 2007 Sep 27;8 Suppl 6(Suppl 6):S5. doi: 10.1186/1471-2105-8-S6-S5. BMC Bioinformatics. 2007. PMID: 17903286 Free PMC article. Review.

6

Computational diagnostics with gene expression profiles.

Lottaz C, Kostka D, Markowetz F, Spang R. Lottaz C, et al. Among authors: markowetz f. Methods Mol Biol. 2008;453:281-96. doi: 10.1007/978-1-60327-429-6_15. Methods Mol Biol. 2008. PMID: 18712310

7

Molecular diagnosis. Classification, model selection and performance evaluation.

Markowetz F, Spang R. Markowetz F, et al. Methods Inf Med. 2005;44(3):438-43. Methods Inf Med. 2005. PMID: 16113770

8

Inferring modulators of genetic interactions with epistatic nested effects models.

Pirkl M, Diekmann M, van der Wees M, Beerenwinkel N, Fröhlich H, Markowetz F. Pirkl M, et al. Among authors: markowetz f. PLoS Comput Biol. 2017 Apr 13;13(4):e1005496. doi: 10.1371/journal.pcbi.1005496. eCollection 2017 Apr. PLoS Comput Biol. 2017. PMID: 28406896 Free PMC article.

9

HTSanalyzeR: an R/Bioconductor package for integrated network analysis of high-throughput screens.

Wang X, Terfve C, Rose JC, Markowetz F. Wang X, et al. Among authors: markowetz f. Bioinformatics. 2011 Mar 15;27(6):879-80. doi: 10.1093/bioinformatics/btr028. Epub 2011 Jan 22. Bioinformatics. 2011. PMID: 21258062 Free PMC article.

10

Penalized regression elucidates aberration hotspots mediating subtype-specific transcriptional responses in breast cancer.

Yuan Y, Rueda OM, Curtis C, Markowetz F. Yuan Y, et al. Among authors: markowetz f. Bioinformatics. 2011 Oct 1;27(19):2679-85. doi: 10.1093/bioinformatics/btr450. Epub 2011 Jul 30. Bioinformatics. 2011. PMID: 21804112

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