Markowetz F - Search Results

1

Parallel factor ChIP provides essential internal control for quantitative differential ChIP-seq.

Guertin MJ, Cullen AE, Markowetz F, Holding AN. Guertin MJ, et al. Among authors: markowetz f. Nucleic Acids Res. 2018 Jul 6;46(12):e75. doi: 10.1093/nar/gky252. Nucleic Acids Res. 2018. PMID: 29672735 Free PMC article.

2

A quantitative mass spectrometry-based approach to monitor the dynamics of endogenous chromatin-associated protein complexes.

Papachristou EK, Kishore K, Holding AN, Harvey K, Roumeliotis TI, Chilamakuri CSR, Omarjee S, Chia KM, Swarbrick A, Lim E, Markowetz F, Eldridge M, Siersbaek R, D'Santos CS, Carroll JS. Papachristou EK, et al. Among authors: markowetz f. Nat Commun. 2018 Jun 13;9(1):2311. doi: 10.1038/s41467-018-04619-5. Nat Commun. 2018. PMID: 29899353 Free PMC article.

3

KHS101 disrupts energy metabolism in human glioblastoma cells and reduces tumor growth in mice.

Polson ES, Kuchler VB, Abbosh C, Ross EM, Mathew RK, Beard HA, da Silva B, Holding AN, Ballereau S, Chuntharpursat-Bon E, Williams J, Griffiths HBS, Shao H, Patel A, Davies AJ, Droop A, Chumas P, Short SC, Lorger M, Gestwicki JE, Roberts LD, Bon RS, Allison SJ, Zhu S, Markowetz F, Wurdak H. Polson ES, et al. Among authors: markowetz f. Sci Transl Med. 2018 Aug 15;10(454):eaar2718. doi: 10.1126/scitranslmed.aar2718. Sci Transl Med. 2018. PMID: 30111643 Free article.

4

Genome-wide Estrogen Receptor-α activation is sustained, not cyclical.

Holding AN, Cullen AE, Markowetz F. Holding AN, et al. Among authors: markowetz f. Elife. 2018 Nov 20;7:e40854. doi: 10.7554/eLife.40854. Elife. 2018. PMID: 30457555 Free PMC article.

5

VULCAN integrates ChIP-seq with patient-derived co-expression networks to identify GRHL2 as a key co-regulator of ERa at enhancers in breast cancer.

Holding AN, Giorgi FM, Donnelly A, Cullen AE, Nagarajan S, Selth LA, Markowetz F. Holding AN, et al. Among authors: markowetz f. Genome Biol. 2019 May 13;20(1):91. doi: 10.1186/s13059-019-1698-z. Genome Biol. 2019. PMID: 31084623 Free PMC article.

6

Correction to: VULCAN integrates ChIP-seq with patient-derived co-expression networks to identify GRHL2 as a key co-regulator of ERa at enhancers in breast cancer.

Holding AN, Giorgi FM, Donnelly A, Cullen AE, Nagarajan S, Selth LA, Markowetz F. Holding AN, et al. Among authors: markowetz f. Genome Biol. 2019 Jun 14;20(1):122. doi: 10.1186/s13059-019-1733-0. Genome Biol. 2019. PMID: 31200751 Free PMC article.

7

Data generation and network reconstruction strategies for single cell transcriptomic profiles of CRISPR-mediated gene perturbations.

Holding AN, Cook HV, Markowetz F. Holding AN, et al. Among authors: markowetz f. Biochim Biophys Acta Gene Regul Mech. 2020 Jun;1863(6):194441. doi: 10.1016/j.bbagrm.2019.194441. Epub 2019 Nov 20. Biochim Biophys Acta Gene Regul Mech. 2020. PMID: 31756390 Review.

8

Intestinal region-specific Wnt signalling profiles reveal interrelation between cell identity and oncogenic pathway activity in cancer development.

Adam RS, van Neerven SM, Pleguezuelos-Manzano C, Simmini S, Léveillé N, de Groot NE, Holding AN, Markowetz F, Vermeulen L. Adam RS, et al. Among authors: markowetz f. Cancer Cell Int. 2020 Dec 3;20(1):578. doi: 10.1186/s12935-020-01661-6. Cancer Cell Int. 2020. PMID: 33292279 Free PMC article.

9

scAbsolute: measuring single-cell ploidy and replication status.

Schneider MP, Cullen AE, Pangonyte J, Skelton J, Major H, Van Oudenhove E, Garcia MJ, Chaves Urbano B, Piskorz AM, Brenton JD, Macintyre G, Markowetz F. Schneider MP, et al. Among authors: markowetz f. Genome Biol. 2024 Mar 4;25(1):62. doi: 10.1186/s13059-024-03204-y. Genome Biol. 2024. PMID: 38438920 Free PMC article.

10

HTSanalyzeR: an R/Bioconductor package for integrated network analysis of high-throughput screens.

Wang X, Terfve C, Rose JC, Markowetz F. Wang X, et al. Among authors: markowetz f. Bioinformatics. 2011 Mar 15;27(6):879-80. doi: 10.1093/bioinformatics/btr028. Epub 2011 Jan 22. Bioinformatics. 2011. PMID: 21258062 Free PMC article.

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