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Dissecting the logical types of network control in gene expression profiles.
Marr C, Geertz M, Hütt MT, Muskhelishvili G. Marr C, et al. BMC Syst Biol. 2008 Feb 19;2:18. doi: 10.1186/1752-0509-2-18. BMC Syst Biol. 2008. PMID: 18284674 Free PMC article.
Intronic microRNAs support their host genes by mediating synergistic and antagonistic regulatory effects.
Lutter D, Marr C, Krumsiek J, Lang EW, Theis FJ. Lutter D, et al. Among authors: marr c. BMC Genomics. 2010 Apr 6;11:224. doi: 10.1186/1471-2164-11-224. BMC Genomics. 2010. PMID: 20370903 Free PMC article.
Patterns of subnet usage reveal distinct scales of regulation in the transcriptional regulatory network of Escherichia coli.
Marr C, Theis FJ, Liebovitch LS, Hütt MT. Marr C, et al. PLoS Comput Biol. 2010 Jul 1;6(7):e1000836. doi: 10.1371/journal.pcbi.1000836. PLoS Comput Biol. 2010. PMID: 20617198 Free PMC article.
Biologically meaningful update rules increase the critical connectivity of generalized Kauffman networks.
Wittmann DM, Marr C, Theis FJ. Wittmann DM, et al. Among authors: marr c. J Theor Biol. 2010 Oct 7;266(3):436-48. doi: 10.1016/j.jtbi.2010.07.007. Epub 2010 Jul 21. J Theor Biol. 2010. PMID: 20654629
Hierarchical differentiation of myeloid progenitors is encoded in the transcription factor network.
Krumsiek J, Marr C, Schroeder T, Theis FJ. Krumsiek J, et al. Among authors: marr c. PLoS One. 2011;6(8):e22649. doi: 10.1371/journal.pone.0022649. Epub 2011 Aug 10. PLoS One. 2011. PMID: 21853041 Free PMC article.
Stability and multiattractor dynamics of a toggle switch based on a two-stage model of stochastic gene expression.
Strasser M, Theis FJ, Marr C. Strasser M, et al. Among authors: marr c. Biophys J. 2012 Jan 4;102(1):19-29. doi: 10.1016/j.bpj.2011.11.4000. Epub 2012 Jan 3. Biophys J. 2012. PMID: 22225794 Free PMC article.
MCA: Multiresolution Correlation Analysis, a graphical tool for subpopulation identification in single-cell gene expression data.
Feigelman J, Theis FJ, Marr C. Feigelman J, et al. Among authors: marr c. BMC Bioinformatics. 2014 Jul 11;15:240. doi: 10.1186/1471-2105-15-240. BMC Bioinformatics. 2014. PMID: 25015590 Free PMC article.
A geometric analysis of fast-slow models for stochastic gene expression.
Popović N, Marr C, Swain PS. Popović N, et al. Among authors: marr c. J Math Biol. 2016 Jan;72(1-2):87-122. doi: 10.1007/s00285-015-0876-1. Epub 2015 Apr 2. J Math Biol. 2016. PMID: 25833185
SimiRa: A tool to identify coregulation between microRNAs and RNA-binding proteins.
Preusse M, Marr C, Saunders S, Maticzka D, Lickert H, Backofen R, Theis F. Preusse M, et al. Among authors: marr c. RNA Biol. 2015;12(9):998-1009. doi: 10.1080/15476286.2015.1068496. RNA Biol. 2015. PMID: 26383775 Free PMC article.
Network plasticity of pluripotency transcription factors in embryonic stem cells.
Filipczyk A, Marr C, Hastreiter S, Feigelman J, Schwarzfischer M, Hoppe PS, Loeffler D, Kokkaliaris KD, Endele M, Schauberger B, Hilsenbeck O, Skylaki S, Hasenauer J, Anastassiadis K, Theis FJ, Schroeder T. Filipczyk A, et al. Among authors: marr c. Nat Cell Biol. 2015 Oct;17(10):1235-46. doi: 10.1038/ncb3237. Epub 2015 Sep 21. Nat Cell Biol. 2015. PMID: 26389663
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