Marti-Renom MA - Search Results

1

ModLink+: improving fold recognition by using protein-protein interactions.

Fornes O, Aragues R, Espadaler J, Marti-Renom MA, Sali A, Oliva B. Fornes O, et al. Bioinformatics. 2009 Jun 15;25(12):1506-12. doi: 10.1093/bioinformatics/btp238. Epub 2009 Apr 8. Bioinformatics. 2009. PMID: 19357100 Free PMC article.

2

Detecting remotely related proteins by their interactions and sequence similarity.

Espadaler J, Aragüés R, Eswar N, Marti-Renom MA, Querol E, Avilés FX, Sali A, Oliva B. Espadaler J, et al. Proc Natl Acad Sci U S A. 2005 May 17;102(20):7151-6. doi: 10.1073/pnas.0500831102. Epub 2005 May 9. Proc Natl Acad Sci U S A. 2005. PMID: 15883372 Free PMC article.

3

Characterization of protein hubs by inferring interacting motifs from protein interactions.

Aragues R, Sali A, Bonet J, Marti-Renom MA, Oliva B. Aragues R, et al. PLoS Comput Biol. 2007 Sep;3(9):1761-71. doi: 10.1371/journal.pcbi.0030178. Epub 2007 Jul 30. PLoS Comput Biol. 2007. PMID: 17941705 Free PMC article.

4

Prediction of enzyme function by combining sequence similarity and protein interactions.

Espadaler J, Eswar N, Querol E, Avilés FX, Sali A, Marti-Renom MA, Oliva B. Espadaler J, et al. BMC Bioinformatics. 2008 May 27;9:249. doi: 10.1186/1471-2105-9-249. BMC Bioinformatics. 2008. PMID: 18505562 Free PMC article.

5

The AnnoLite and AnnoLyze programs for comparative annotation of protein structures.

Marti-Renom MA, Rossi A, Al-Shahrour F, Davis FP, Pieper U, Dopazo J, Sali A. Marti-Renom MA, et al. BMC Bioinformatics. 2007 May 22;8 Suppl 4(Suppl 4):S4. doi: 10.1186/1471-2105-8-S4-S4. BMC Bioinformatics. 2007. PMID: 17570147 Free PMC article.

6

DBAli: a database of protein structure alignments.

Martí-Renom MA, Ilyin VA, Sali A. Martí-Renom MA, et al. Bioinformatics. 2001 Aug;17(8):746-7. doi: 10.1093/bioinformatics/17.8.746. Bioinformatics. 2001. PMID: 11524379

7

ModView, visualization of multiple protein sequences and structures.

Ilyin VA, Pieper U, Stuart AC, Marti-Renom MA, McMahan L, Sali A. Ilyin VA, et al. Bioinformatics. 2003 Jan;19(1):165-6. doi: 10.1093/bioinformatics/19.1.165. Bioinformatics. 2003. PMID: 12499313

8

Alignment of protein sequences by their profiles.

Marti-Renom MA, Madhusudhan MS, Sali A. Marti-Renom MA, et al. Protein Sci. 2004 Apr;13(4):1071-87. doi: 10.1110/ps.03379804. Protein Sci. 2004. PMID: 15044736 Free PMC article.

9

DBAli tools: mining the protein structure space.

Marti-Renom MA, Pieper U, Madhusudhan MS, Rossi A, Eswar N, Davis FP, Al-Shahrour F, Dopazo J, Sali A. Marti-Renom MA, et al. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W393-7. doi: 10.1093/nar/gkm236. Epub 2007 May 3. Nucleic Acids Res. 2007. PMID: 17478513 Free PMC article.

10

EVA: continuous automatic evaluation of protein structure prediction servers.

Eyrich VA, Martí-Renom MA, Przybylski D, Madhusudhan MS, Fiser A, Pazos F, Valencia A, Sali A, Rost B. Eyrich VA, et al. Bioinformatics. 2001 Dec;17(12):1242-3. doi: 10.1093/bioinformatics/17.12.1242. Bioinformatics. 2001. PMID: 11751240

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