Marti-Renom MA - Search Results

1

Genome structure determination via 3C-based data integration by the Integrative Modeling Platform.

Baù D, Marti-Renom MA. Baù D, et al. Methods. 2012 Nov;58(3):300-6. doi: 10.1016/j.ymeth.2012.04.004. Epub 2012 Apr 13. Methods. 2012. PMID: 22522224 Review.

2

Protein structure modeling for structural genomics.

Sánchez R, Pieper U, Melo F, Eswar N, Martí-Renom MA, Madhusudhan MS, Mirković N, Sali A. Sánchez R, et al. Nat Struct Biol. 2000 Nov;7 Suppl:986-90. doi: 10.1038/80776. Nat Struct Biol. 2000. PMID: 11104007 Review.

3

DBAli tools: mining the protein structure space.

Marti-Renom MA, Pieper U, Madhusudhan MS, Rossi A, Eswar N, Davis FP, Al-Shahrour F, Dopazo J, Sali A. Marti-Renom MA, et al. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W393-7. doi: 10.1093/nar/gkm236. Epub 2007 May 3. Nucleic Acids Res. 2007. PMID: 17478513 Free PMC article.

4

Characterization of protein hubs by inferring interacting motifs from protein interactions.

Aragues R, Sali A, Bonet J, Marti-Renom MA, Oliva B. Aragues R, et al. PLoS Comput Biol. 2007 Sep;3(9):1761-71. doi: 10.1371/journal.pcbi.0030178. Epub 2007 Jul 30. PLoS Comput Biol. 2007. PMID: 17941705 Free PMC article.

5

RNA structure alignment by a unit-vector approach.

Capriotti E, Marti-Renom MA. Capriotti E, et al. Bioinformatics. 2008 Aug 15;24(16):i112-8. doi: 10.1093/bioinformatics/btn288. Bioinformatics. 2008. PMID: 18689811

6

SARA: a server for function annotation of RNA structures.

Capriotti E, Marti-Renom MA. Capriotti E, et al. Nucleic Acids Res. 2009 Jul;37(Web Server issue):W260-5. doi: 10.1093/nar/gkp433. Epub 2009 May 29. Nucleic Acids Res. 2009. PMID: 19483098 Free PMC article.

7

Quantifying the relationship between sequence and three-dimensional structure conservation in RNA.

Capriotti E, Marti-Renom MA. Capriotti E, et al. BMC Bioinformatics. 2010 Jun 15;11:322. doi: 10.1186/1471-2105-11-322. BMC Bioinformatics. 2010. PMID: 20550657 Free PMC article.

8

The three-dimensional folding of the α-globin gene domain reveals formation of chromatin globules.

Baù D, Sanyal A, Lajoie BR, Capriotti E, Byron M, Lawrence JB, Dekker J, Marti-Renom MA. Baù D, et al. Nat Struct Mol Biol. 2011 Jan;18(1):107-14. doi: 10.1038/nsmb.1936. Epub 2010 Dec 5. Nat Struct Mol Biol. 2011. PMID: 21131981 Free PMC article.

9

Structure determination of genomic domains by satisfaction of spatial restraints.

Baù D, Marti-Renom MA. Baù D, et al. Chromosome Res. 2011 Jan;19(1):25-35. doi: 10.1007/s10577-010-9167-2. Chromosome Res. 2011. PMID: 21190133 Review.

10

All-atom knowledge-based potential for RNA structure prediction and assessment.

Capriotti E, Norambuena T, Marti-Renom MA, Melo F. Capriotti E, et al. Bioinformatics. 2011 Apr 15;27(8):1086-93. doi: 10.1093/bioinformatics/btr093. Epub 2011 Feb 23. Bioinformatics. 2011. PMID: 21349865

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