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605 results
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ESpritz: accurate and fast prediction of protein disorder.
Walsh I, Martin AJ, Di Domenico T, Tosatto SC. Walsh I, et al. Among authors: martin aj. Bioinformatics. 2012 Feb 15;28(4):503-9. doi: 10.1093/bioinformatics/btr682. Epub 2011 Dec 20. Bioinformatics. 2012. PMID: 22190692
Neural network pairwise interaction fields for protein model quality assessment and ab initio protein folding.
Martin AJ, Mirabello C, Pollastri G. Martin AJ, et al. Curr Protein Pept Sci. 2011 Sep;12(6):549-62. doi: 10.2174/138920311796957649. Curr Protein Pept Sci. 2011. PMID: 21787307
Ab initio and homology based prediction of protein domains by recursive neural networks.
Walsh I, Martin AJ, Mooney C, Rubagotti E, Vullo A, Pollastri G. Walsh I, et al. Among authors: martin aj. BMC Bioinformatics. 2009 Jun 26;10:195. doi: 10.1186/1471-2105-10-195. BMC Bioinformatics. 2009. PMID: 19558651 Free PMC article.
Ab initio and template-based prediction of multi-class distance maps by two-dimensional recursive neural networks.
Walsh I, Baù D, Martin AJ, Mooney C, Vullo A, Pollastri G. Walsh I, et al. Among authors: martin aj. BMC Struct Biol. 2009 Jan 30;9:5. doi: 10.1186/1472-6807-9-5. BMC Struct Biol. 2009. PMID: 19183478 Free PMC article.
Long-range information and physicality constraints improve predicted protein contact maps.
Martin AJ, Baù D, Vullo A, Walsh I, Pollastri G. Martin AJ, et al. J Bioinform Comput Biol. 2008 Oct;6(5):1001-20. doi: 10.1142/s0219720008003783. J Bioinform Comput Biol. 2008. PMID: 18942163
Distill: a suite of web servers for the prediction of one-, two- and three-dimensional structural features of proteins.
Baú D, Martin AJ, Mooney C, Vullo A, Walsh I, Pollastri G. Baú D, et al. Among authors: martin aj. BMC Bioinformatics. 2006 Sep 5;7:402. doi: 10.1186/1471-2105-7-402. BMC Bioinformatics. 2006. PMID: 16953874 Free PMC article.
Accurate prediction of protein secondary structure and solvent accessibility by consensus combiners of sequence and structure information.
Pollastri G, Martin AJ, Mooney C, Vullo A. Pollastri G, et al. Among authors: martin aj. BMC Bioinformatics. 2007 Jun 14;8:201. doi: 10.1186/1471-2105-8-201. BMC Bioinformatics. 2007. PMID: 17570843 Free PMC article.
PANADA: protein association network annotation, determination and analysis.
Martin AJ, Walsh I, Domenico TD, Mičetić I, Tosatto SC. Martin AJ, et al. PLoS One. 2013 Nov 12;8(11):e78383. doi: 10.1371/journal.pone.0078383. eCollection 2013. PLoS One. 2013. PMID: 24265686 Free PMC article.
MobiDB: a comprehensive database of intrinsic protein disorder annotations.
Di Domenico T, Walsh I, Martin AJ, Tosatto SC. Di Domenico T, et al. Among authors: martin aj. Bioinformatics. 2012 Aug 1;28(15):2080-1. doi: 10.1093/bioinformatics/bts327. Epub 2012 Jun 1. Bioinformatics. 2012. PMID: 22661649
CSpritz: accurate prediction of protein disorder segments with annotation for homology, secondary structure and linear motifs.
Walsh I, Martin AJ, Di Domenico T, Vullo A, Pollastri G, Tosatto SC. Walsh I, et al. Among authors: martin aj. Nucleic Acids Res. 2011 Jul;39(Web Server issue):W190-6. doi: 10.1093/nar/gkr411. Epub 2011 Jun 6. Nucleic Acids Res. 2011. PMID: 21646342 Free PMC article.
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