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21 results
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Nonsense surveillance regulates expression of diverse classes of mammalian transcripts and mutes genomic noise.
Mendell JT, Sharifi NA, Meyers JL, Martinez-Murillo F, Dietz HC. Mendell JT, et al. Nat Genet. 2004 Oct;36(10):1073-8. doi: 10.1038/ng1429. Epub 2004 Sep 26. Nat Genet. 2004. PMID: 15448691
Stacking the deck: double-tiled DNA microarrays.
Wheelan SJ, Martínez-Murillo F, Irizarry RA, Boeke JD. Wheelan SJ, et al. Nat Methods. 2006 Nov;3(11):903-7. doi: 10.1038/nmeth951. Nat Methods. 2006. PMID: 17060914
Multiple-laboratory comparison of microarray platforms.
Irizarry RA, Warren D, Spencer F, Kim IF, Biswal S, Frank BC, Gabrielson E, Garcia JG, Geoghegan J, Germino G, Griffin C, Hilmer SC, Hoffman E, Jedlicka AE, Kawasaki E, Martínez-Murillo F, Morsberger L, Lee H, Petersen D, Quackenbush J, Scott A, Wilson M, Yang Y, Ye SQ, Yu W. Irizarry RA, et al. Nat Methods. 2005 May;2(5):345-50. doi: 10.1038/nmeth756. Epub 2005 Apr 21. Nat Methods. 2005. PMID: 15846361
Microarray and serial analysis of gene expression analyses identify known and novel transcripts overexpressed in hematopoietic stem cells.
Georgantas RW 3rd, Tanadve V, Malehorn M, Heimfeld S, Chen C, Carr L, Martinez-Murillo F, Riggins G, Kowalski J, Civin CI. Georgantas RW 3rd, et al. Cancer Res. 2004 Jul 1;64(13):4434-41. doi: 10.1158/0008-5472.CAN-03-3247. Cancer Res. 2004. PMID: 15231652
Transposon insertion site profiling chip (TIP-chip).
Wheelan SJ, Scheifele LZ, Martínez-Murillo F, Irizarry RA, Boeke JD. Wheelan SJ, et al. Among authors: martinez murillo f. Proc Natl Acad Sci U S A. 2006 Nov 21;103(47):17632-7. doi: 10.1073/pnas.0605450103. Epub 2006 Nov 13. Proc Natl Acad Sci U S A. 2006. PMID: 17101968 Free PMC article.
The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models.
Shi L, Campbell G, Jones WD, Campagne F, Wen Z, Walker SJ, Su Z, Chu TM, Goodsaid FM, Pusztai L, Shaughnessy JD Jr, Oberthuer A, Thomas RS, Paules RS, Fielden M, Barlogie B, Chen W, Du P, Fischer M, Furlanello C, Gallas BD, Ge X, Megherbi DB, Symmans WF, Wang MD, Zhang J, Bitter H, Brors B, Bushel PR, Bylesjo M, Chen M, Cheng J, Cheng J, Chou J, Davison TS, Delorenzi M, Deng Y, Devanarayan V, Dix DJ, Dopazo J, Dorff KC, Elloumi F, Fan J, Fan S, Fan X, Fang H, Gonzaludo N, Hess KR, Hong H, Huan J, Irizarry RA, Judson R, Juraeva D, Lababidi S, Lambert CG, Li L, Li Y, Li Z, Lin SM, Liu G, Lobenhofer EK, Luo J, Luo W, McCall MN, Nikolsky Y, Pennello GA, Perkins RG, Philip R, Popovici V, Price ND, Qian F, Scherer A, Shi T, Shi W, Sung J, Thierry-Mieg D, Thierry-Mieg J, Thodima V, Trygg J, Vishnuvajjala L, Wang SJ, Wu J, Wu Y, Xie Q, Yousef WA, Zhang L, Zhang X, Zhong S, Zhou Y, Zhu S, Arasappan D, Bao W, Lucas AB, Berthold F, Brennan RJ, Buness A, Catalano JG, Chang C, Chen R, Cheng Y, Cui J, Czika W, Demichelis F, Deng X, Dosymbekov D, Eils R, Feng Y, Fostel J, Fulmer-Smentek S, Fuscoe JC, Gatto L, Ge W, Goldstein DR, Guo L, Halbert DN, Han J, Harris SC, Hatzis C, Herman D, Huang J, Jensen RV, Jiang R, Johnson CD, Jurman G, Kahlert Y, Khuder SA, Kohl M, Li J, Li L, Li M, Li QZ, Li S, Li Z, Liu J, Liu Y, Liu Z, Meng L, Madera M, Martinez-Murillo F, Medina I, Meehan J, Miclaus K, Moffitt RA, Montaner D, Mukherjee P, Mulligan GJ, Neville P, Nikolskaya T, Ning B, Page GP, Parker J, Parry RM, Peng X, Peterson RL, Phan JH, Quanz B, Ren Y, Riccadonna S, Roter AH, Samuelson FW, Schumacher MM, Shambaugh JD, Shi Q, Shippy R, Si S, Smalter A, Sotiriou C, Soukup M, Staedtler F, Steiner G, Stokes TH, Sun Q, Tan PY, Tang R, Tezak Z, Thorn B, Tsyganova M, Turpaz Y, Vega SC, Visintainer R, von Frese J, Wang C, Wang E, Wang J, Wang W, Westermann F, Willey JC, Woods M, Wu S, Xiao N, Xu J, Xu L, Yang L, Zeng X, Zhang J, Zhang L, Zhang M, Zhao C, Puri RK, Scherf U, Tong W, Wolfinger RD; MAQC Consortium. Shi L, et al. Among authors: martinez murillo f. Nat Biotechnol. 2010 Aug;28(8):827-38. doi: 10.1038/nbt.1665. Epub 2010 Jul 30. Nat Biotechnol. 2010. PMID: 20676074 Free PMC article.
The incredible shrinking world of DNA microarrays.
Wheelan SJ, Martínez Murillo F, Boeke JD. Wheelan SJ, et al. Among authors: martinez murillo f. Mol Biosyst. 2008 Jul;4(7):726-32. doi: 10.1039/b706237k. Epub 2008 Apr 17. Mol Biosyst. 2008. PMID: 18563246 Free PMC article. Review.
Regulation of c-Met-dependent gene expression by PTEN.
Abounader R, Reznik T, Colantuoni C, Martinez-Murillo F, Rosen EM, Laterra J. Abounader R, et al. Oncogene. 2004 Dec 9;23(57):9173-82. doi: 10.1038/sj.onc.1208146. Oncogene. 2004. PMID: 15516982
Role of cocaine- and amphetamine-regulated transcript in estradiol-mediated neuroprotection.
Xu Y, Zhang W, Klaus J, Young J, Koerner I, Sheldahl LC, Hurn PD, Martínez-Murillo F, Alkayed NJ. Xu Y, et al. Proc Natl Acad Sci U S A. 2006 Sep 26;103(39):14489-94. doi: 10.1073/pnas.0602932103. Epub 2006 Sep 13. Proc Natl Acad Sci U S A. 2006. PMID: 16971488 Free PMC article.
Hepatitis B virus replication induces methylation of both host and viral DNA.
Vivekanandan P, Daniel HD, Kannangai R, Martinez-Murillo F, Torbenson M. Vivekanandan P, et al. Among authors: martinez murillo f. J Virol. 2010 May;84(9):4321-9. doi: 10.1128/JVI.02280-09. Epub 2010 Feb 10. J Virol. 2010. PMID: 20147412 Free PMC article.
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